| Chain sequence(s) |
H: QVQLQQSAAELARPGASVKMSCKASGYTFIKYTMHWVKQRPGQGLEWIGYINPSSGYIEYNQKFKDKTTLTADKSSSTAYMQLSSLTSEDSAVYYCARGTLLGLSWGQGTTLTVSA
L: DIQMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPLTFGAGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:31)
[INFO] Main: Simulation completed successfully. (00:02:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.2655 | |
| 2 | V | H | -0.4419 | |
| 3 | Q | H | -1.7565 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0136 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.7619 | |
| 8 | A | H | -0.4853 | |
| 9 | A | H | -0.0322 | |
| 11 | E | H | -0.3498 | |
| 12 | L | H | 0.6787 | |
| 13 | A | H | -0.5344 | |
| 14 | R | H | -1.8180 | |
| 15 | P | H | -1.3863 | |
| 16 | G | H | -1.1219 | |
| 17 | A | H | -0.9807 | |
| 18 | S | H | -1.0125 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.2313 | |
| 21 | M | H | 0.0000 | |
| 22 | S | H | -0.4880 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.3470 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0101 | |
| 27 | G | H | -0.8290 | |
| 28 | Y | H | -0.3857 | |
| 29 | T | H | -0.3690 | |
| 30 | F | H | 0.0000 | |
| 35 | I | H | -0.5274 | |
| 36 | K | H | -1.2483 | |
| 37 | Y | H | -0.3817 | |
| 38 | T | H | -0.1132 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | -0.0524 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8494 | |
| 45 | R | H | -1.5158 | |
| 46 | P | H | -1.0781 | |
| 47 | G | H | -1.3491 | |
| 48 | Q | H | -1.8402 | |
| 49 | G | H | -1.1189 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8778 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.0662 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.5567 | |
| 62 | S | H | 0.1345 | |
| 63 | G | H | 0.0661 | |
| 64 | Y | H | 1.1618 | |
| 65 | I | H | 0.8800 | |
| 66 | E | H | 0.0786 | |
| 67 | Y | H | -0.8382 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.9283 | |
| 70 | K | H | -3.0524 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.4637 | |
| 74 | D | H | -3.1750 | |
| 75 | K | H | -2.2107 | |
| 76 | T | H | 0.0000 | |
| 77 | T | H | -0.8002 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2095 | |
| 80 | A | H | -0.6754 | |
| 81 | D | H | -1.5355 | |
| 82 | K | H | -1.9405 | |
| 83 | S | H | -1.1771 | |
| 84 | S | H | -1.0233 | |
| 85 | S | H | -0.9968 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1235 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.8911 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.0201 | |
| 93 | S | H | -1.0402 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.3212 | |
| 96 | S | H | -1.3961 | |
| 97 | E | H | -2.0352 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.7325 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0502 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | G | H | 0.2440 | |
| 108 | T | H | 0.7830 | |
| 109 | L | H | 1.7846 | |
| 114 | L | H | 1.9733 | |
| 115 | G | H | 0.8689 | |
| 116 | L | H | 0.7012 | |
| 117 | S | H | -0.1963 | |
| 118 | W | H | -0.5492 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.7840 | |
| 121 | G | H | -0.6970 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1002 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.2209 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5483 | |
| 128 | A | H | -0.5907 | |
| 1 | D | L | -2.2151 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.1954 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.1373 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.5853 | |
| 8 | P | L | -0.4872 | |
| 9 | S | L | -0.6864 | |
| 10 | S | L | -0.9638 | |
| 11 | L | L | -0.4834 | |
| 12 | S | L | -0.6637 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.6160 | |
| 15 | L | L | 0.2729 | |
| 16 | G | L | -1.1226 | |
| 17 | E | L | -2.1677 | |
| 18 | R | L | -2.4972 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6384 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.8317 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.8276 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.2428 | |
| 27 | Q | L | -2.9016 | |
| 28 | E | L | -2.6771 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.7783 | |
| 37 | G | L | -0.1522 | |
| 38 | Y | L | 0.8373 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.5114 | |
| 46 | P | L | -1.3673 | |
| 47 | D | L | -2.2382 | |
| 48 | G | L | -1.5026 | |
| 49 | T | L | -1.2473 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -0.7489 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.8456 | |
| 56 | A | L | 0.6026 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2307 | |
| 66 | T | L | 0.2402 | |
| 67 | L | L | 0.1736 | |
| 68 | D | L | 0.1008 | |
| 69 | S | L | -0.1943 | |
| 70 | G | L | -0.6920 | |
| 71 | V | L | -0.5767 | |
| 72 | P | L | -1.0120 | |
| 74 | K | L | -1.7101 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4874 | |
| 78 | G | L | -0.4032 | |
| 79 | S | L | -0.9235 | |
| 80 | R | L | -1.6811 | |
| 83 | S | L | -1.2932 | |
| 84 | G | L | -1.4106 | |
| 85 | S | L | -1.9553 | |
| 86 | D | L | -1.6834 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.8524 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5951 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5613 | |
| 93 | S | L | -1.6119 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.5553 | |
| 96 | S | L | -1.0274 | |
| 97 | E | L | -2.1661 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.7691 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.1223 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.7985 | |
| 108 | A | L | 0.0621 | |
| 109 | S | L | -0.1481 | |
| 114 | Y | L | 0.4310 | |
| 115 | P | L | -0.5011 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.4568 | |
| 118 | F | L | -0.1375 | |
| 119 | G | L | 0.0000 | |
| 120 | A | L | -0.4191 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.7490 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.1322 | |
| 126 | L | L | 0.3427 | |
| 127 | K | L | -1.0522 |