| Chain sequence(s) |
A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK B: AEAEAKAKAEAEAKAK D: AEAEAKAKAEAEAKAK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:35)
[INFO] Main: Simulation completed successfully. (00:03:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -1.1616 | |
| 2 | E | A | -2.2183 | |
| 3 | A | A | -1.8836 | |
| 4 | E | A | -1.7444 | |
| 5 | A | A | -1.9429 | |
| 6 | K | A | -2.7746 | |
| 7 | A | A | -2.2646 | |
| 8 | K | A | -2.3628 | |
| 9 | A | A | -2.1179 | |
| 10 | E | A | -2.6130 | |
| 11 | A | A | -2.7877 | |
| 12 | E | A | -3.0673 | |
| 13 | A | A | -2.0754 | |
| 14 | K | A | -2.7302 | |
| 15 | A | A | 0.0000 | |
| 16 | K | A | -3.5257 | |
| 1 | A | B | -1.1786 | |
| 2 | E | B | -2.2504 | |
| 3 | A | B | -1.9530 | |
| 4 | E | B | -2.0010 | |
| 5 | A | B | -2.0415 | |
| 6 | K | B | -2.7705 | |
| 7 | A | B | -2.2702 | |
| 8 | K | B | -2.3936 | |
| 9 | A | B | -2.1637 | |
| 10 | E | B | -2.6022 | |
| 11 | A | B | -2.7170 | |
| 12 | E | B | -2.9652 | |
| 13 | A | B | -2.1370 | |
| 14 | K | B | -2.9900 | |
| 15 | A | B | 0.0000 | |
| 16 | K | B | -3.5843 | |
| 1 | A | C | -1.1817 | |
| 2 | E | C | -2.2409 | |
| 3 | A | C | -1.9004 | |
| 4 | E | C | -1.7971 | |
| 5 | A | C | -1.9292 | |
| 6 | K | C | -2.6091 | |
| 7 | A | C | -2.0186 | |
| 8 | K | C | -1.9516 | |
| 9 | A | C | -1.7473 | |
| 10 | E | C | -1.9358 | |
| 11 | A | C | -2.1895 | |
| 12 | E | C | 0.0000 | |
| 13 | A | C | -1.5582 | |
| 14 | K | C | -2.1517 | |
| 15 | A | C | 0.0000 | |
| 16 | K | C | -3.4112 | |
| 1 | A | D | -1.1593 | |
| 2 | E | D | -2.2308 | |
| 3 | A | D | -1.8992 | |
| 4 | E | D | -1.9001 | |
| 5 | A | D | -1.9646 | |
| 6 | K | D | -2.6603 | |
| 7 | A | D | -2.1250 | |
| 8 | K | D | -2.1171 | |
| 9 | A | D | -1.8421 | |
| 10 | E | D | -2.2437 | |
| 11 | A | D | -2.3073 | |
| 12 | E | D | -2.6041 | |
| 13 | A | D | -1.8034 | |
| 14 | K | D | -2.5095 | |
| 15 | A | D | 0.0000 | |
| 16 | K | D | -3.4537 |