Project name: KPC 1st cassette NoJE

Status: done

Started: 2026-07-02 14:33:29
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Chain sequence(s) A: MDAMKRGLCCVLLLCGAVFVSPSQEIHARGKSCGVIAMPLAGQATHRVHMEVMPEEEENSAFESVPNSVQSPELDPESTQPSLPGTTSGSLGSVPGAPAPPAASYPYDVPDYA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:34)
Show buried residues

Minimal score value
-4.5565
Maximal score value
4.8497
Average score
0.0151
Total score value
1.7107

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.0671
2 D A -1.9664
3 A A -1.0838
4 M A -0.3842
5 K A -1.9261
6 R A -1.6496
7 G A 0.2074
8 L A 1.9881
9 C A 2.1250
10 C A 2.8636
11 V A 4.2067
12 L A 4.3716
13 L A 4.6358
14 L A 4.8497
15 C A 4.0381
16 G A 3.5426
17 A A 3.5563
18 V A 4.0466
19 F A 4.2939
20 V A 3.2509
21 S A 1.4290
22 P A 0.1277
23 S A -1.0215
24 Q A -1.7857
25 E A -1.8411
26 I A -0.0975
27 H A -1.2948
28 A A -1.2760
29 R A -2.4204
30 G A -2.3067
31 K A -2.1697
32 S A -0.8369
33 C A 0.0665
34 G A 0.6871
35 V A 1.5619
36 I A 2.6897
37 A A 1.5732
38 M A 1.9173
39 P A 0.9253
40 L A 0.8349
41 A A 0.1706
42 G A -0.7054
43 Q A -1.3229
44 A A -0.8774
45 T A -0.8045
46 H A -1.1091
47 R A -0.8884
48 V A 0.7651
49 H A -0.1228
50 M A 0.4891
51 E A -0.6153
52 V A 0.8865
53 M A 0.3740
54 P A -1.3740
55 E A -3.0830
56 E A -4.2297
57 E A -4.5565
58 E A -4.1673
59 N A -2.8678
60 S A -1.3341
61 A A -0.0010
62 F A 0.8398
63 E A -0.5940
64 S A 0.0753
65 V A 0.8006
66 P A -0.0231
67 N A -0.7552
68 S A -0.1102
69 V A 0.6797
70 Q A -0.8816
71 S A -0.8210
72 P A -1.1608
73 E A -1.8944
74 L A -0.6818
75 D A -2.2344
76 P A -1.8535
77 E A -2.5085
78 S A -1.6996
79 T A -1.5120
80 Q A -1.5001
81 P A -0.5860
82 S A -0.0719
83 L A 0.9383
84 P A 0.1499
85 G A -0.2689
86 T A -0.2063
87 T A -0.3918
88 S A -0.4115
89 G A -0.3480
90 S A 0.0654
91 L A 1.2475
92 G A 0.5211
93 S A 0.7189
94 V A 1.5226
95 P A 0.2503
96 G A -0.1671
97 A A 0.0151
98 P A -0.4446
99 A A -0.2884
100 P A -0.3810
101 P A -0.3845
102 A A 0.0145
103 A A 0.2198
104 S A 0.5492
105 Y A 1.2691
106 P A 0.6682
107 Y A 1.1584
108 D A -0.4952
109 V A 0.8131
110 P A -0.2086
111 D A -1.0090
112 Y A 0.6352
113 A A 0.1642
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Laboratory of Theory of Biopolymers 2018