Project name: query_structure

Status: done

Started: 2026-03-16 23:02:29
Settings
Chain sequence(s) A: CVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCRKLGTAMNPCSRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:21)
Show buried residues

Minimal score value
-1.8129
Maximal score value
2.0904
Average score
-0.1836
Total score value
-8.4442

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.5810
2 V A 0.0000
3 R A -1.5492
4 L A -0.4854
5 H A -1.4218
6 E A -0.9826
7 S A -0.1056
8 C A 0.0000
9 L A 0.7923
10 G A -0.7697
11 Q A -1.4981
12 Q A -1.3788
13 V A -0.2331
14 P A -0.5666
15 C A 0.0000
16 C A 0.4479
17 D A -0.5141
18 P A -0.0365
19 C A 0.4217
20 A A -0.1993
21 T A -0.0716
22 C A -0.4635
23 Y A -0.0566
24 C A 0.4920
25 R A -0.1612
26 F A 1.9790
27 F A 2.0904
28 N A 0.2689
29 A A 0.8062
30 F A 1.1463
31 C A 0.0000
32 Y A -0.4027
33 C A 0.0000
34 R A -0.9217
35 K A 0.0000
36 L A -0.1049
37 G A -0.5404
38 T A -0.2789
39 A A -0.0677
40 M A 0.3928
41 N A -0.7111
42 P A -0.6322
43 C A -0.1898
44 S A -0.7541
45 R A -1.8129
46 T A -0.9526
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018