Project name: 5KEL VHVL

Status: done

Started: 2026-03-30 05:21:27
Settings
Chain sequence(s) H: EVQLQESGGGLMQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKRSVYLQMNTLRAEDTGIYYCTRGNGNYRAMDYWGQGTSVTVS
L: DIQMTQSPASLSVSVGETVSITCRASENIYSSLAWYQQKQGKSPQLLVYSATILADGVPSRFSGSGSGTQYSLKINSLQSEDFGTYYCQHFWGTPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-2.9878
Maximal score value
1.3196
Average score
-0.6404
Total score value
-145.3666

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9541
2 V H -0.9348
3 Q H -1.0607
4 L H 0.0000
5 Q H -0.8184
6 E H 0.0000
7 S H -0.7773
8 G H -0.9806
9 G H -0.4110
11 G H 0.3301
12 L H 1.1293
13 M H -0.0648
14 Q H -1.2974
15 P H -1.5275
16 G H -1.2913
17 G H -1.0321
18 S H -0.9443
19 M H -0.7270
20 K H -1.6143
21 L H 0.0000
22 S H -0.3855
23 C H 0.0000
24 V H 0.1031
25 A H 0.0000
26 S H -0.9308
27 G H -1.1981
28 F H 0.0000
29 T H -0.6509
30 F H 0.0000
35 S H -1.2976
36 N H -1.5141
37 Y H -0.5435
38 W H -0.3864
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5227
45 S H 0.0000
46 P H -1.4214
47 E H -2.6085
48 K H -2.1905
49 G H -1.2572
50 L H 0.0000
51 E H -0.5643
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 E H 0.0000
56 I H 0.0000
57 R H -0.8827
58 L H -1.3964
59 K H -2.5226
60 S H -1.7806
61 N H -1.7442
62 N H -2.0528
63 Y H -1.1012
64 A H -0.7733
65 T H -0.2779
66 H H -0.6633
67 Y H -1.0514
68 A H -1.4266
69 E H -2.5163
70 S H -1.7259
71 V H 0.0000
72 K H -2.6228
74 G H -1.6891
75 R H -1.3764
76 F H 0.0000
77 T H -0.7993
78 I H 0.0000
79 S H -0.1315
80 R H 0.0000
81 D H -1.4286
82 D H -1.9339
83 S H -1.5876
84 K H -2.2275
85 R H -1.7181
86 S H 0.0000
87 V H 0.0000
88 Y H -0.1966
89 L H 0.0000
90 Q H -1.0012
91 M H 0.0000
92 N H -1.1411
93 T H -1.0500
94 L H 0.0000
95 R H -2.0204
96 A H -1.6018
97 E H -2.5030
98 D H 0.0000
99 T H -0.6023
100 G H -0.5152
101 I H 0.3096
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 G H 0.0000
108 N H -0.4218
109 G H -1.1087
110 N H -1.1204
112 Y H -0.0110
113 R H 0.0000
114 A H 0.0000
115 M H 0.0000
116 D H 0.0000
117 Y H 0.2354
118 W H -0.3153
119 G H 0.0000
120 Q H -1.8297
121 G H -0.9252
122 T H -0.5104
123 S H -0.0792
124 V H 0.0000
125 T H -0.0180
126 V H 0.0000
127 S H -0.5454
1 D L -2.2270
2 I L -1.8376
3 Q L -2.2146
4 M L 0.0000
5 T L -1.4053
6 Q L -0.9958
7 S L -0.7940
8 P L -0.5071
9 A L -0.6074
10 S L -1.0732
11 L L -0.5320
12 S L -0.6059
13 V L -0.1717
14 S L -0.1552
15 V L 0.6359
16 G L -0.6337
17 E L -1.4062
18 T L -1.0526
19 V L 0.0000
20 S L -0.6515
21 I L 0.0000
22 T L -1.0201
23 C L 0.0000
24 R L -2.9465
25 A L 0.0000
26 S L -2.1313
27 E L -2.3083
28 N L -1.3774
29 I L 0.0000
36 Y L 0.8385
37 S L 0.3324
38 S L 0.5825
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.7656
45 K L -2.6075
46 Q L -2.3739
47 G L -2.2125
48 K L -2.9878
49 S L -1.7732
50 P L 0.0000
51 Q L -1.1822
52 L L 0.0000
53 L L 0.0000
54 V L 0.0000
55 Y L 0.8431
56 S L 0.5772
57 A L 0.0000
65 T L 0.5411
66 I L 1.3196
67 L L 0.6226
68 A L -0.4654
69 D L -1.7289
70 G L -1.2012
71 V L -0.5362
72 P L -0.4811
74 S L -0.4111
75 R L -0.8354
76 F L 0.0000
77 S L -0.3446
78 G L -0.1344
79 S L -0.5650
80 G L -0.8875
83 S L -0.7493
84 G L -0.9161
85 T L -1.7777
86 Q L -2.2698
87 Y L 0.0000
88 S L -1.0400
89 L L 0.0000
90 K L -1.2352
91 I L 0.0000
92 N L -1.3041
93 S L -1.0121
94 L L 0.0000
95 Q L -0.7821
96 S L -0.6156
97 E L -1.6090
98 D L 0.0000
99 F L 0.0000
100 G L -1.7112
101 T L -1.4582
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 H L 0.0000
107 F L 0.8406
108 W L 0.9836
109 G L 0.0161
114 T L -0.2485
115 P L -0.8291
116 Y L 0.0000
117 T L -0.5640
118 F L 0.0000
119 G L 0.0000
120 G L -1.0314
121 G L 0.0000
122 T L 0.0000
123 K L -2.2405
124 L L 0.0000
125 E L -1.1879
126 I L 0.8155
127 K L -0.8393
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Laboratory of Theory of Biopolymers 2018