Project name: 4OD2

Status: done

Started: 2026-03-29 09:51:10
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Chain sequence(s) H: EVQLVQSGGGVERPGGSLRLSCAASGFTFDDYAMSWVRQAPGKGLEWVSGINWQGGSTGYADSVKGRVTISRDNAKNSLYLQMNSLRAEDTAVYYCAKILGAGRGWYFDYWGKGTTVTVSS
L: SELTQDPAVSVALGQTVRITCSGDSLRSYYASWYQQKPGQAPVLVIYGANNRPSGIPDRFSGSSSGNTASLTITGAQAEDEADYYCNSADSSGNHVVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:45)
Show buried residues

Minimal score value
-3.0677
Maximal score value
1.7196
Average score
-0.6281
Total score value
-143.2095

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9617
2 V H -0.6872
3 Q H -0.5257
4 L H 0.0000
5 V H 1.1541
6 Q H 0.0967
7 S H -0.4229
8 G H -0.7566
9 G H -0.3549
11 G H 0.3482
12 V H 0.9722
13 E H -0.8823
14 R H -2.2693
15 P H -2.3085
16 G H -1.7348
17 G H -1.4275
18 S H -1.3295
19 L H -0.9033
20 R H -1.4022
21 L H 0.0000
22 S H -0.2353
23 C H 0.0000
24 A H -0.0975
25 A H 0.0000
26 S H -0.6220
27 G H -1.0762
28 F H -0.6667
29 T H -0.7213
30 F H 0.0000
35 D H -1.5580
36 D H -1.3086
37 Y H -0.2968
38 A H -0.1145
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7744
45 A H -1.1807
46 P H -0.9677
47 G H -1.5312
48 K H -2.2460
49 G H -1.5098
50 L H 0.0000
51 E H -0.8747
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 G H 0.0000
56 I H 0.0000
57 N H -0.4838
58 W H -0.3566
59 Q H -1.4603
62 G H -0.9628
63 G H -0.8321
64 S H -0.6899
65 T H -0.4650
66 G H -0.6857
67 Y H -0.8817
68 A H -1.2459
69 D H -2.2756
70 S H -1.6011
71 V H 0.0000
72 K H -1.8792
74 G H -1.4077
75 R H -1.4357
76 V H 0.0000
77 T H -0.7037
78 I H 0.0000
79 S H -0.5972
80 R H -1.0516
81 D H -1.6014
82 N H -1.8957
83 A H -1.4016
84 K H -2.3305
85 N H -2.0602
86 S H -1.1644
87 L H 0.0000
88 Y H -0.3651
89 L H 0.0000
90 Q H -1.0604
91 M H 0.0000
92 N H -1.5776
93 S H -1.4467
94 L H 0.0000
95 R H -2.5411
96 A H -1.9045
97 E H -2.2570
98 D H 0.0000
99 T H -0.6622
100 A H 0.0000
101 V H 0.0997
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 I H 0.0000
108 L H 0.4435
109 G H -0.4720
110 A H -0.5066
111 G H -1.2924
112A R H -2.0974
112 G H -0.7811
113 W H -0.4163
114 Y H 0.1902
115 F H 0.0000
116 D H 0.5927
117 Y H 0.8924
118 W H 0.3996
119 G H 0.0000
120 K H -1.4836
121 G H -0.7454
122 T H -0.3277
123 T H 0.1108
124 V H 0.0000
125 T H -0.2122
126 V H 0.0000
127 S H -1.0140
128 S H -0.8443
2 S L -1.5989
3 E L -2.3298
4 L L 0.0000
5 T L -1.0980
6 Q L -0.8340
7 D L -0.8391
8 P L -0.8306
9 A L -0.4925
11 V L -0.2488
12 S L 0.2640
13 V L 0.0000
14 A L 0.7669
15 L L 1.0101
16 G L -0.3975
17 Q L -0.9892
18 T L -0.9345
19 V L 0.0000
20 R L -1.1013
21 I L 0.0000
22 T L -0.4643
23 C L 0.0000
24 S L -1.3038
25 G L -2.0936
26 D L -3.0677
27 S L 0.0000
28 L L 0.0000
29 R L -2.6736
36 S L -1.2211
37 Y L -0.3316
38 Y L 0.6203
39 A L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3208
46 P L -1.1894
47 G L -1.2392
48 Q L -1.7085
49 A L -0.8610
50 P L 0.0000
51 V L 0.7656
52 L L 0.0000
53 V L 0.0000
54 I L 0.0000
55 Y L -0.3740
56 G L -0.2219
57 A L 0.0000
65 N L -1.7278
66 N L -1.7050
67 R L -1.8248
68 P L -0.6684
69 S L -0.8408
70 G L -0.8068
71 I L -0.7003
72 P L -1.1851
74 D L -2.1063
75 R L -1.2058
76 F L 0.0000
77 S L -1.3504
78 G L -1.1208
79 S L -0.7301
80 S L -0.6718
83 S L -0.8531
84 G L -1.7599
85 N L -2.1064
86 T L -1.0829
87 A L 0.0000
88 S L -0.6235
89 L L 0.0000
90 T L -0.7554
91 I L 0.0000
92 T L -1.0981
93 G L -0.7784
94 A L 0.0000
95 Q L -1.0048
96 A L -0.6048
97 E L -1.7933
98 D L 0.0000
99 E L -1.3345
100 A L 0.0000
101 D L -1.1383
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 N L 0.0000
106 S L 0.0000
107 A L 0.0000
108 D L -1.2253
109 S L -1.4193
110 S L -0.7507
113 G L 0.0000
114 N L -1.4855
115 H L -0.9394
116 V L 0.0000
117 V L -0.5963
118 F L 0.0000
119 G L 0.0000
120 G L -1.3800
121 G L 0.0000
122 T L 0.0000
123 K L -1.1690
124 L L 0.0000
125 T L 0.2486
126 V L 0.6279
127 L L 1.7196
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Laboratory of Theory of Biopolymers 2018