Project name: 2E10

Status: done

Started: 2025-11-19 08:33:11
Settings
Chain sequence(s) H: QVQLVQSGAEGRKPGSSVKVSCKVSGDTFSSYAISWVRQAPGQGLEWMGGIIPIFGAADYAQKFKGRVTISADESTSTAYMELSSLRSEDTAVYYCAKGPDYYGSFDPWGQGTLITVSS
L: DIQMTQSPSSLSASVGDRVTITCRTSQTITNYLNWYQQKPGRAPKLLIFDASNLETGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCQQSYNPGYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:55)
Show buried residues

Minimal score value
-3.1807
Maximal score value
2.8523
Average score
-0.5846
Total score value
-132.1138

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.8725
2 V H 0.0000
3 Q H -1.6419
4 L H 0.0000
5 V H 0.7431
6 Q H 0.0000
7 S H -0.3875
8 G H -0.4136
9 A H -0.2198
11 E H -1.1731
12 G H -1.3636
13 R H -2.2418
14 K H -2.7670
15 P H -2.1619
16 G H -1.6939
17 S H -1.3499
18 S H -1.5149
19 V H 0.0000
20 K H -2.1935
21 V H 0.0000
22 S H -0.5397
23 C H 0.0000
24 K H -0.6244
25 V H 0.0000
26 S H -1.2046
27 G H -1.7044
28 D H -1.8897
29 T H -0.7797
30 F H 0.0000
35 S H 0.5186
36 S H 0.2866
37 Y H 0.0471
38 A H 0.3644
39 I H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.5400
45 A H -0.9124
46 P H -0.7331
47 G H -1.2149
48 Q H -1.8394
49 G H -1.3341
50 L H 0.0000
51 E H -0.7867
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 I H 1.3276
58 P H 0.0000
59 I H 2.6065
62 F H 2.8523
63 G H 0.9804
64 A H 0.8328
65 A H -0.0225
66 D H -1.0616
67 Y H -1.4879
68 A H -2.0202
69 Q H -2.9850
70 K H -2.8313
71 F H 0.0000
72 K H -3.0148
74 G H -1.9017
75 R H -1.7915
76 V H 0.0000
77 T H -1.1115
78 I H 0.0000
79 S H -0.4464
80 A H -0.5459
81 D H -1.3594
82 E H -1.9006
83 S H -1.2668
84 T H -1.0666
85 S H -1.4791
86 T H 0.0000
87 A H 0.0000
88 Y H -0.6462
89 M H 0.0000
90 E H -1.7562
91 L H 0.0000
92 S H -1.2698
93 S H -1.2677
94 L H 0.0000
95 R H -3.1807
96 S H -2.4082
97 E H -2.5565
98 D H 0.0000
99 T H -0.9776
100 A H 0.0000
101 V H 0.5015
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 G H 0.0000
108 P H -0.4647
109 D H -0.9389
110 Y H 0.9256
112 Y H 0.9927
113 G H 0.0000
114 S H 0.0000
115 F H 0.0000
116 D H -0.5771
117 P H -0.8651
118 W H 0.0000
119 G H 0.0000
120 Q H -1.3987
121 G H -0.5320
122 T H 0.0000
123 L H 0.6569
124 I H 0.0000
125 T H -1.0418
126 V H 0.0000
127 S H -1.5827
128 S H -1.1329
1 D L -2.4528
2 I L 0.0000
3 Q L -2.2409
4 M L 0.0000
5 T L -1.4242
6 Q L 0.0000
7 S L -0.7754
8 P L -0.5782
9 S L -0.9127
10 S L -1.1626
11 L L -0.7494
12 S L -0.8731
13 A L 0.0000
14 S L -0.1607
15 V L 0.7469
16 G L -0.5127
17 D L -1.4254
18 R L -2.0870
19 V L 0.0000
20 T L -0.5849
21 I L 0.0000
22 T L -0.8130
23 C L 0.0000
24 R L -2.6433
25 T L 0.0000
26 S L -1.8080
27 Q L -1.7037
28 T L -0.8198
29 I L 0.0000
36 T L -0.4247
37 N L -0.4861
38 Y L 0.5519
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.7932
44 Q L 0.0000
45 K L -1.7045
46 P L -1.2498
47 G L -1.7143
48 R L -2.6962
49 A L -1.6702
50 P L 0.0000
51 K L -1.1554
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 F L 0.2508
56 D L -0.1774
57 A L 0.0000
65 S L -0.5739
66 N L -0.5556
67 L L -0.0370
68 E L -0.3672
69 T L -0.3528
70 G L -0.4615
71 V L -0.2578
72 P L -0.3204
74 S L -0.3952
75 R L -0.7441
76 F L 0.0000
77 S L -0.3918
78 G L -0.3858
79 S L -0.8081
80 G L -1.1349
83 S L -1.0842
84 G L -1.0194
85 T L -1.5332
86 D L -1.9347
87 F L 0.0000
88 T L -0.7189
89 L L 0.0000
90 T L -0.5871
91 I L 0.0000
92 S L -1.2266
93 S L -0.9805
94 L L 0.0000
95 Q L -0.4957
96 P L -0.7008
97 E L -1.7589
98 D L 0.0000
99 F L -0.6711
100 A L 0.0000
101 T L -1.1328
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 Y L 1.1076
109 N L -0.1754
114 P L -0.5808
115 G L -0.9509
116 Y L -0.3496
117 T L -0.7567
118 F L 0.0000
119 G L 0.0000
120 Q L -1.6214
121 G L 0.0000
122 T L 0.0000
123 K L -1.9882
124 L L 0.0000
125 E L -1.3097
126 I L 0.6664
127 K L -0.9236
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Laboratory of Theory of Biopolymers 2018