Project name: 4A12

Status: done

Started: 2024-12-28 01:03:47
Settings
Chain sequence(s) A: ARVEQTPTTTTKEAGESLTINCVLRDSSCPLPSASTYWFFTKKGATKKESLSNGGRYAETMNKTSKSFSLRISDLRVEDSGTYHCKAYPGGYCDGIYYYEGGGTILTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:47)
Show buried residues

Minimal score value
-3.49
Maximal score value
2.5417
Average score
-0.763
Total score value
-82.4064

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.9942
2 R A -3.1364
3 V A 0.0000
4 E A -1.8377
5 Q A 0.0000
6 T A -0.4123
7 P A -0.1665
8 T A 0.1025
9 T A 0.5293
10 T A 0.2887
11 T A -0.2851
12 K A -1.3727
13 E A -2.4039
14 A A -1.8875
15 G A -2.2018
16 E A -2.5036
17 S A -1.9569
18 L A 0.0000
19 T A -0.9387
20 I A 0.0000
21 N A -1.0652
22 C A 0.0000
23 V A -1.2560
24 L A 0.0000
25 R A -2.9115
26 D A -2.9258
27 S A 0.0000
28 S A -0.8928
29 C A 0.0000
30 P A -0.7632
31 L A 0.0000
32 P A -0.7900
33 S A -0.6136
34 A A 0.1566
35 S A 0.0000
36 T A 0.3220
37 Y A 0.6633
38 W A 0.0000
39 F A -0.7224
40 F A -1.3697
41 T A -2.2806
42 K A -2.8203
43 K A -2.2198
44 G A -1.7483
45 A A -1.8658
46 T A -2.0148
47 K A -3.2001
48 K A -3.4900
49 E A -3.1160
50 S A -1.0508
51 L A -0.5826
52 S A -0.9377
53 N A -1.8357
54 G A -1.4668
55 G A -1.2004
56 R A -1.7276
57 Y A -1.5976
58 A A -1.4820
59 E A -1.2511
60 T A -0.8907
61 M A -0.9830
62 N A -1.8771
63 K A -2.3284
64 T A -1.3339
65 S A -1.2458
66 K A -1.5254
67 S A -1.2007
68 F A 0.0000
69 S A -0.9378
70 L A 0.0000
71 R A -1.9646
72 I A 0.0000
73 S A -1.9563
74 D A -2.7699
75 L A 0.0000
76 R A -1.7006
77 V A 0.0515
78 E A -1.4795
79 D A 0.0000
80 S A 0.0000
81 G A 0.0000
82 T A -0.1811
83 Y A 0.0000
84 H A -0.5961
85 C A 0.0000
86 K A -0.5538
87 A A 0.0000
88 Y A 0.8836
89 P A 0.0000
90 G A 0.2940
91 G A 0.7249
92 Y A 1.9651
93 C A 1.0704
94 D A 0.4748
95 G A 1.0588
96 I A 2.3884
97 Y A 2.5417
98 Y A 1.1475
99 Y A -0.7621
100 E A -2.1219
101 G A 0.0000
102 G A -1.1573
103 G A 0.0000
104 T A 0.0000
105 I A 1.2801
106 L A 0.0000
107 T A -0.1335
108 V A -0.3546
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Laboratory of Theory of Biopolymers 2018