Project name: query_structure

Status: done

Started: 2026-03-16 23:19:09
Settings
Chain sequence(s) A: GCLGDKCDYNNGCCSGYVCSRTWKWCVLAGPW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:42)
Show buried residues

Minimal score value
-3.0415
Maximal score value
2.1419
Average score
-0.3904
Total score value
-12.4935

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.1944
2 C A 0.1900
3 L A 1.0440
4 G A -0.9730
5 D A -2.5725
6 K A -3.0415
7 C A 0.0000
8 D A -2.6685
9 Y A -0.6723
10 N A -1.7944
11 N A -2.5049
12 G A -1.5282
13 C A -0.2703
14 C A 0.5601
15 S A 0.2206
16 G A 0.3796
17 Y A 1.4124
18 V A 1.3548
19 C A -0.5704
20 S A -0.7617
21 R A -1.9928
22 T A -0.6222
23 W A -0.0397
24 K A -1.8878
25 W A -1.6258
26 C A 0.0000
27 V A 1.4554
28 L A 2.1419
29 A A 0.9384
30 G A 0.3264
31 P A 0.2733
32 W A 0.9300
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Laboratory of Theory of Biopolymers 2018