Project name: query_structure

Status: done

Started: 2026-03-16 23:25:44
Settings
Chain sequence(s) A: GLLCYCRKGHCKRGERVRGTCGIRFLYCCPRR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:29)
Show buried residues

Minimal score value
-3.797
Maximal score value
1.8557
Average score
-1.1119
Total score value
-35.5792

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.1785
2 L A 1.8557
3 L A 1.4854
4 C A 1.0670
5 Y A 1.5867
6 C A 0.0212
7 R A -2.4397
8 K A -2.6084
9 G A -2.2612
10 H A -3.2682
11 C A -3.1317
12 K A -3.2775
13 R A -3.7970
14 G A -3.0313
15 E A -3.5451
16 R A -2.6097
17 V A -0.1712
18 R A -1.6473
19 G A -0.7158
20 T A 0.0581
21 C A 0.4318
22 G A 0.3045
23 I A 1.0262
24 R A -1.3359
25 F A -0.5758
26 L A 0.0000
27 Y A -0.7302
28 C A 0.0000
29 C A -0.8478
30 P A -2.1894
31 R A -2.7491
32 R A -2.6620
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Laboratory of Theory of Biopolymers 2018