Project name: SKGHKGH12

Status: done

Started: 2026-05-21 12:29:06
Settings
Chain sequence(s) A: SKGHKGH
C: SKGHKGH
B: SKGHKGH
E: SKGHKGH
D: SKGHKGH
G: SKGHKGH
F: SKGHKGH
I: SKGHKGH
H: SKGHKGH
K: SKGHKGH
J: SKGHKGH
L: SKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:59)
Show buried residues

Minimal score value
-4.5836
Maximal score value
0.0
Average score
-3.0342
Total score value
-254.8713

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -1.6127
2 K A -2.7875
3 G A -2.9112
4 H A -2.8587
5 K A -3.4841
6 G A -2.3390
7 H A -1.9914
1 S B -2.2753
2 K B -3.3662
3 G B -3.2612
4 H B -3.7646
5 K B -3.3777
6 G B -2.3015
7 H B -1.9271
1 S C -2.5854
2 K C -3.0727
3 G C -2.8335
4 H C -3.4041
5 K C -3.7140
6 G C -3.3138
7 H C -2.6755
1 S D 0.0000
2 K D -4.3012
3 G D -3.6868
4 H D -3.6445
5 K D -3.1448
6 G D -2.5664
7 H D -1.8327
1 S E -2.9393
2 K E -4.0432
3 G E -4.0900
4 H E -3.9752
5 K E -3.6408
6 G E -2.9232
7 H E -2.8497
1 S F -1.7628
2 K F -3.7726
3 G F -2.8737
4 H F -3.2497
5 K F -3.5586
6 G F -3.5841
7 H F -3.4350
1 S G -1.8507
2 K G -3.4167
3 G G -3.5057
4 H G -3.4783
5 K G -3.0271
6 G G -2.7248
7 H G -1.9437
1 S H -2.1619
2 K H -3.5280
3 G H -3.5258
4 H H -3.4793
5 K H -3.9728
6 G H -3.4887
7 H H -3.6877
1 S I -1.2253
2 K I -2.5280
3 G I -2.3252
4 H I -2.8161
5 K I -3.4517
6 G I -3.0899
7 H I -3.6756
1 S J -3.0651
2 K J -4.3822
3 G J -3.7164
4 H J -3.3243
5 K J -3.3075
6 G J -2.0531
7 H J -1.7453
1 S K -2.5616
2 K K -3.2147
3 G K -2.8949
4 H K -3.1539
5 K K -3.7494
6 G K -3.1827
7 H K -2.8025
1 S L -2.2939
2 K L -3.5531
3 G L -3.2264
4 H L -3.4256
5 K L -4.5836
6 G L -3.5552
7 H L -2.4454
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Laboratory of Theory of Biopolymers 2018