Project name: Busy_A3D

Status: done

Started: 2025-12-11 05:42:42
Settings
Chain sequence(s) A: QDKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:47)
Show buried residues

Minimal score value
-3.7112
Maximal score value
1.1049
Average score
-1.0897
Total score value
-58.8452

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.6763
2 D A -3.2673
3 K A -3.1348
4 C A -2.4151
5 K A -2.3427
6 K A -1.8987
7 V A -0.1484
8 Y A -1.1946
9 E A -2.1312
10 N A -1.7375
11 Y A -0.6579
12 P A -0.3353
13 V A 0.7955
14 S A 0.0955
15 K A -0.5339
16 C A 0.0000
17 Q A -0.5943
18 L A 0.4952
19 A A -0.3951
20 N A -1.3170
21 Q A -0.7434
22 C A 0.0000
23 N A -1.0824
24 Y A -0.0270
25 D A 0.0000
26 C A 0.0000
27 K A -1.6107
28 L A -0.2081
29 D A -1.7233
30 K A -2.1136
31 H A -2.0546
32 A A 0.0000
33 R A -2.4067
34 S A -1.7545
35 G A 0.0000
36 E A -1.5035
37 C A 0.1081
38 F A 1.1049
39 Y A -0.0153
40 D A -1.9164
41 E A -3.1738
42 K A -3.7112
43 R A -3.3294
44 N A -2.1627
45 L A -0.3329
46 Q A -0.0768
47 C A 0.0000
48 I A -0.2965
49 C A 0.0000
50 D A -2.3893
51 Y A -1.8520
52 C A -1.3242
53 E A -1.3753
54 Y A 0.5193
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018