| Chain sequence(s) |
A: SVPAGAKCRLVETLPENMDFRSDHLTTFECFNEIITLAKKYIYIASFCCNPLSTTRGALIFDKLKEVSEKGIKIIVLLDERGKRNLGELQSHSPDINFITVNIDKKNNVGLLLGCFWVSDDERCYVGNASFTGGSIHTIKTLGVYSDYPPLATDLRRRFDTFKAFNSAKNSWLNLCSAACCLPVSTAYHIKNPIGGVFFTDSPEHLLGYSRDLDTDVVIDKLKSAKTSIDIEHLAIVPTTRVDGNSYYWPDIYNSIIEAAINRGVKIRLLVGNWDKNDVYSMATARSLDALCVQNDLSVKVFTIQNNTKLLIVDDEYVHITSANFDGTHYQNHGFVSFNSIDKQLVSEAKKIFERDWVSSHSKSLKI
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:07:31)
[INFO] Main: Simulation completed successfully. (00:07:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 6 | S | A | 0.6214 | |
| 7 | V | A | 1.4748 | |
| 8 | P | A | 0.4375 | |
| 9 | A | A | -0.3283 | |
| 10 | G | A | 0.0000 | |
| 11 | A | A | 0.0000 | |
| 12 | K | A | -1.6855 | |
| 13 | C | A | -1.5615 | |
| 14 | R | A | -2.2083 | |
| 15 | L | A | 0.0000 | |
| 16 | V | A | 0.0000 | |
| 17 | E | A | 0.0000 | |
| 18 | T | A | 0.0000 | |
| 19 | L | A | -0.8725 | |
| 20 | P | A | 0.0000 | |
| 21 | E | A | -2.8402 | |
| 22 | N | A | -2.3734 | |
| 23 | M | A | 0.0000 | |
| 24 | D | A | -2.3385 | |
| 25 | F | A | 0.0000 | |
| 26 | R | A | -2.7680 | |
| 27 | S | A | -2.0690 | |
| 28 | D | A | -2.2579 | |
| 29 | H | A | -1.6040 | |
| 30 | L | A | -0.8946 | |
| 31 | T | A | -0.5592 | |
| 32 | T | A | 0.0000 | |
| 33 | F | A | -0.3024 | |
| 34 | E | A | -1.4041 | |
| 35 | C | A | 0.0000 | |
| 36 | F | A | 0.0000 | |
| 37 | N | A | -0.8757 | |
| 38 | E | A | -1.1144 | |
| 39 | I | A | 0.0000 | |
| 40 | I | A | 0.0000 | |
| 41 | T | A | -0.3678 | |
| 42 | L | A | -0.2477 | |
| 43 | A | A | 0.0000 | |
| 44 | K | A | -2.8102 | |
| 45 | K | A | -2.9633 | |
| 46 | Y | A | 0.0000 | |
| 47 | I | A | 0.0000 | |
| 48 | Y | A | -0.4599 | |
| 49 | I | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 52 | F | A | 0.1136 | |
| 53 | C | A | -0.4692 | |
| 54 | C | A | 0.0000 | |
| 55 | N | A | -0.3957 | |
| 56 | P | A | 0.0000 | |
| 57 | L | A | 0.1677 | |
| 58 | S | A | -0.1020 | |
| 59 | T | A | -0.0077 | |
| 60 | T | A | 0.0731 | |
| 61 | R | A | -0.0050 | |
| 62 | G | A | 0.0000 | |
| 63 | A | A | 0.0036 | |
| 64 | L | A | 0.2202 | |
| 65 | I | A | 0.0000 | |
| 66 | F | A | 0.0000 | |
| 67 | D | A | -2.3752 | |
| 68 | K | A | -1.8786 | |
| 69 | L | A | 0.0000 | |
| 70 | K | A | -3.2581 | |
| 71 | E | A | -3.7726 | |
| 72 | V | A | 0.0000 | |
| 73 | S | A | 0.0000 | |
| 74 | E | A | -4.0505 | |
| 75 | K | A | -3.7722 | |
| 76 | G | A | -3.0776 | |
| 77 | I | A | -3.0876 | |
| 78 | K | A | -3.0993 | |
| 79 | I | A | 0.0000 | |
| 80 | I | A | -0.8339 | |
| 81 | V | A | 0.0000 | |
| 82 | L | A | 0.0000 | |
| 83 | L | A | 0.0000 | |
| 84 | D | A | 0.0000 | |
| 85 | E | A | -1.8620 | |
| 86 | R | A | -2.6804 | |
| 87 | G | A | 0.0000 | |
| 88 | K | A | -2.7454 | |
| 89 | R | A | -3.0336 | |
| 90 | N | A | -2.0711 | |
| 91 | L | A | -1.5721 | |
| 92 | G | A | -1.7226 | |
| 93 | E | A | -1.7465 | |
| 94 | L | A | 0.0000 | |
| 95 | Q | A | -2.0759 | |
| 96 | S | A | -1.6334 | |
| 97 | H | A | -2.1362 | |
| 98 | S | A | 0.0000 | |
| 99 | P | A | -2.2311 | |
| 100 | D | A | -3.6309 | |
| 101 | I | A | 0.0000 | |
| 102 | N | A | -2.0115 | |
| 103 | F | A | 0.0000 | |
| 104 | I | A | -0.3391 | |
| 105 | T | A | -0.7505 | |
| 106 | V | A | 0.0000 | |
| 107 | N | A | -1.1293 | |
| 108 | I | A | 0.0000 | |
| 109 | D | A | 0.0000 | |
| 110 | K | A | -3.2686 | |
| 111 | K | A | -3.4467 | |
| 112 | N | A | -3.0831 | |
| 113 | N | A | -2.7373 | |
| 114 | V | A | -1.5261 | |
| 115 | G | A | 0.0000 | |
| 116 | L | A | -0.2959 | |
| 117 | L | A | 0.0000 | |
| 118 | L | A | 0.3737 | |
| 119 | G | A | 0.0000 | |
| 120 | C | A | 0.0000 | |
| 121 | F | A | 0.0000 | |
| 122 | W | A | 0.0000 | |
| 123 | V | A | 0.0000 | |
| 124 | S | A | 0.0000 | |
| 125 | D | A | -1.6809 | |
| 126 | D | A | -1.4709 | |
| 127 | E | A | -1.5605 | |
| 128 | R | A | -1.2612 | |
| 129 | C | A | 0.0000 | |
| 130 | Y | A | 0.0000 | |
| 131 | V | A | 0.0000 | |
| 132 | G | A | 0.0000 | |
| 133 | N | A | 0.0000 | |
| 134 | A | A | 0.0000 | |
| 135 | S | A | 0.0534 | |
| 136 | F | A | 0.0000 | |
| 137 | T | A | 0.0231 | |
| 138 | G | A | 0.0000 | |
| 139 | G | A | -0.2033 | |
| 140 | S | A | 0.0000 | |
| 141 | I | A | 0.0000 | |
| 142 | H | A | -0.3150 | |
| 143 | T | A | -0.6201 | |
| 144 | I | A | -0.0742 | |
| 145 | K | A | 0.0000 | |
| 146 | T | A | 0.0000 | |
| 147 | L | A | 0.0000 | |
| 148 | G | A | 0.0000 | |
| 149 | V | A | 0.0000 | |
| 150 | Y | A | 0.0000 | |
| 151 | S | A | 0.0000 | |
| 152 | D | A | -2.0431 | |
| 153 | Y | A | -1.0341 | |
| 154 | P | A | -1.1272 | |
| 155 | P | A | -0.3406 | |
| 156 | L | A | 0.0000 | |
| 157 | A | A | 0.0000 | |
| 158 | T | A | -0.6981 | |
| 159 | D | A | 0.0000 | |
| 160 | L | A | 0.0000 | |
| 161 | R | A | -1.0595 | |
| 162 | R | A | -1.0155 | |
| 163 | R | A | 0.0000 | |
| 164 | F | A | 0.0000 | |
| 165 | D | A | -1.2933 | |
| 166 | T | A | 0.0000 | |
| 167 | F | A | 0.0000 | |
| 168 | K | A | -0.8052 | |
| 169 | A | A | 0.0000 | |
| 170 | F | A | 0.0000 | |
| 171 | N | A | -0.9181 | |
| 172 | S | A | -1.1458 | |
| 173 | A | A | -1.3019 | |
| 174 | K | A | -2.5085 | |
| 175 | N | A | -2.2451 | |
| 176 | S | A | 0.0000 | |
| 177 | W | A | -0.0003 | |
| 178 | L | A | 0.0000 | |
| 179 | N | A | -2.0222 | |
| 180 | L | A | -0.1591 | |
| 181 | C | A | 0.8394 | |
| 182 | S | A | 0.5329 | |
| 183 | A | A | 0.5324 | |
| 184 | A | A | 0.8306 | |
| 185 | C | A | 1.3564 | |
| 186 | C | A | 1.2798 | |
| 187 | L | A | 0.6276 | |
| 188 | P | A | -0.0178 | |
| 189 | V | A | 0.2455 | |
| 190 | S | A | -0.0944 | |
| 191 | T | A | -0.0752 | |
| 192 | A | A | -0.1874 | |
| 193 | Y | A | -0.4421 | |
| 194 | H | A | -0.6793 | |
| 195 | I | A | -0.5236 | |
| 196 | K | A | -1.9158 | |
| 197 | N | A | -1.6824 | |
| 198 | P | A | -0.7333 | |
| 199 | I | A | 0.0000 | |
| 200 | G | A | 0.0234 | |
| 201 | G | A | -0.2416 | |
| 202 | V | A | 0.0000 | |
| 203 | F | A | 0.0000 | |
| 204 | F | A | 0.0000 | |
| 205 | T | A | 0.0000 | |
| 206 | D | A | 0.0000 | |
| 207 | S | A | 0.0000 | |
| 208 | P | A | 0.0000 | |
| 209 | E | A | -2.3765 | |
| 210 | H | A | -1.8709 | |
| 211 | L | A | -0.8272 | |
| 212 | L | A | 0.0000 | |
| 213 | G | A | -0.1951 | |
| 214 | Y | A | 0.7790 | |
| 215 | S | A | 0.4428 | |
| 216 | R | A | 0.0000 | |
| 217 | D | A | -0.6550 | |
| 218 | L | A | -1.0599 | |
| 219 | D | A | 0.0000 | |
| 220 | T | A | 0.0000 | |
| 221 | D | A | -2.2730 | |
| 222 | V | A | 0.0000 | |
| 223 | V | A | 0.0000 | |
| 224 | I | A | -1.9157 | |
| 225 | D | A | -2.8049 | |
| 226 | K | A | -2.0527 | |
| 227 | L | A | 0.0000 | |
| 228 | K | A | -2.6327 | |
| 229 | S | A | -1.9378 | |
| 230 | A | A | 0.0000 | |
| 231 | K | A | -2.4967 | |
| 232 | T | A | -1.7175 | |
| 233 | S | A | -1.5935 | |
| 234 | I | A | 0.0000 | |
| 235 | D | A | 0.0000 | |
| 236 | I | A | 0.0000 | |
| 237 | E | A | 0.0000 | |
| 238 | H | A | 0.0000 | |
| 239 | L | A | 1.2062 | |
| 240 | A | A | 0.6636 | |
| 241 | I | A | 0.0000 | |
| 242 | V | A | 0.6690 | |
| 243 | P | A | 0.2414 | |
| 244 | T | A | 0.4256 | |
| 245 | T | A | -0.6855 | |
| 246 | R | A | -2.3418 | |
| 247 | V | A | -1.8385 | |
| 248 | D | A | -2.6573 | |
| 249 | G | A | -2.2758 | |
| 250 | N | A | -2.4904 | |
| 251 | S | A | -1.3516 | |
| 252 | Y | A | -0.0403 | |
| 253 | Y | A | 1.0977 | |
| 254 | W | A | 0.0000 | |
| 255 | P | A | -0.4785 | |
| 256 | D | A | -1.3980 | |
| 257 | I | A | 0.0000 | |
| 258 | Y | A | -0.6966 | |
| 259 | N | A | -1.6636 | |
| 260 | S | A | 0.0000 | |
| 261 | I | A | 0.0000 | |
| 262 | I | A | -0.3498 | |
| 263 | E | A | -0.9451 | |
| 264 | A | A | 0.0000 | |
| 265 | A | A | 0.0000 | |
| 266 | I | A | 0.0298 | |
| 267 | N | A | -1.0084 | |
| 268 | R | A | -1.7282 | |
| 269 | G | A | -1.7172 | |
| 270 | V | A | 0.0000 | |
| 271 | K | A | -2.5328 | |
| 272 | I | A | 0.0000 | |
| 273 | R | A | -0.9307 | |
| 274 | L | A | 0.0000 | |
| 275 | L | A | 0.0000 | |
| 276 | V | A | 0.0000 | |
| 277 | G | A | -0.4207 | |
| 278 | N | A | -1.4885 | |
| 279 | W | A | -1.3965 | |
| 280 | D | A | -2.8413 | |
| 281 | K | A | -2.8313 | |
| 282 | N | A | -2.1223 | |
| 283 | D | A | 0.0000 | |
| 284 | V | A | 1.1673 | |
| 285 | Y | A | 0.5674 | |
| 286 | S | A | 0.0000 | |
| 287 | M | A | 0.0017 | |
| 288 | A | A | 0.1948 | |
| 289 | T | A | 0.0000 | |
| 290 | A | A | 0.0000 | |
| 291 | R | A | -1.4429 | |
| 292 | S | A | -1.0434 | |
| 293 | L | A | 0.0000 | |
| 294 | D | A | -1.2588 | |
| 295 | A | A | -0.5730 | |
| 296 | L | A | -0.3045 | |
| 297 | C | A | -0.2400 | |
| 298 | V | A | 0.6495 | |
| 299 | Q | A | -0.6906 | |
| 300 | N | A | -1.2169 | |
| 301 | D | A | -2.2336 | |
| 302 | L | A | 0.0000 | |
| 303 | S | A | -0.7349 | |
| 304 | V | A | 0.0000 | |
| 305 | K | A | -1.0416 | |
| 306 | V | A | 0.0000 | |
| 307 | F | A | 0.0000 | |
| 308 | T | A | -0.7805 | |
| 309 | I | A | -0.5210 | |
| 310 | Q | A | -0.9295 | |
| 311 | N | A | -0.4213 | |
| 312 | N | A | -0.2450 | |
| 313 | T | A | 0.0000 | |
| 314 | K | A | 0.0000 | |
| 315 | L | A | 0.0000 | |
| 316 | L | A | 0.0000 | |
| 317 | I | A | 0.0000 | |
| 318 | V | A | 0.0000 | |
| 319 | D | A | -1.9627 | |
| 320 | D | A | -2.1581 | |
| 321 | E | A | -2.3758 | |
| 322 | Y | A | 0.0000 | |
| 323 | V | A | 0.0000 | |
| 324 | H | A | 0.0000 | |
| 325 | I | A | 0.0000 | |
| 326 | T | A | 0.0000 | |
| 327 | S | A | 0.0000 | |
| 328 | A | A | 0.0000 | |
| 329 | N | A | 0.0000 | |
| 330 | F | A | 0.0000 | |
| 331 | D | A | 0.0000 | |
| 332 | G | A | 0.0000 | |
| 333 | T | A | -0.3390 | |
| 334 | H | A | -0.4172 | |
| 335 | Y | A | 0.0000 | |
| 336 | Q | A | -1.3710 | |
| 337 | N | A | -1.3958 | |
| 338 | H | A | 0.0000 | |
| 339 | G | A | 0.0000 | |
| 340 | F | A | 0.0000 | |
| 341 | V | A | 0.0000 | |
| 342 | S | A | 0.0000 | |
| 343 | F | A | 0.0000 | |
| 344 | N | A | 0.0000 | |
| 345 | S | A | 0.0000 | |
| 346 | I | A | -0.4629 | |
| 347 | D | A | -1.4285 | |
| 348 | K | A | -2.8010 | |
| 349 | Q | A | -2.5514 | |
| 350 | L | A | 0.0000 | |
| 351 | V | A | 0.0000 | |
| 352 | S | A | -2.1643 | |
| 353 | E | A | -1.9411 | |
| 354 | A | A | 0.0000 | |
| 355 | K | A | -1.8957 | |
| 356 | K | A | -2.2938 | |
| 357 | I | A | 0.0000 | |
| 358 | F | A | 0.0000 | |
| 359 | E | A | -1.0148 | |
| 360 | R | A | -0.9705 | |
| 361 | D | A | 0.0000 | |
| 362 | W | A | 0.0000 | |
| 363 | V | A | 1.1469 | |
| 364 | S | A | 0.0000 | |
| 365 | S | A | -0.5279 | |
| 366 | H | A | -0.6968 | |
| 367 | S | A | 0.0000 | |
| 368 | K | A | -2.0414 | |
| 369 | S | A | -1.1041 | |
| 370 | L | A | -1.2380 | |
| 371 | K | A | -1.2986 | |
| 372 | I | A | 0.7541 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine