| Chain sequence(s) |
A: GGGHKFG
C: GGGHKFG B: GGGHKFG E: GGGHKFG D: GGGHKFG G: GGGHKFG F: GGGHKFG I: GGGHKFG H: GGGHKFG K: GGGHKFG J: GGGHKFG L: GGGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:56)
[INFO] Main: Simulation completed successfully. (00:01:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2985 | |
| 2 | G | A | -1.6199 | |
| 3 | G | A | -2.1223 | |
| 4 | H | A | -2.3175 | |
| 5 | K | A | -2.0356 | |
| 6 | F | A | -0.1064 | |
| 7 | G | A | -0.4480 | |
| 1 | G | B | -1.3479 | |
| 2 | G | B | 0.0000 | |
| 3 | G | B | -2.1614 | |
| 4 | H | B | -1.7748 | |
| 5 | K | B | -1.7181 | |
| 6 | F | B | 0.4355 | |
| 7 | G | B | -0.2292 | |
| 1 | G | C | -1.3189 | |
| 2 | G | C | -1.7602 | |
| 3 | G | C | -2.0181 | |
| 4 | H | C | -1.6178 | |
| 5 | K | C | -1.6685 | |
| 6 | F | C | 0.6122 | |
| 7 | G | C | 0.1549 | |
| 1 | G | D | -1.3672 | |
| 2 | G | D | -1.7269 | |
| 3 | G | D | -2.0671 | |
| 4 | H | D | -1.8511 | |
| 5 | K | D | -1.6446 | |
| 6 | F | D | 0.5680 | |
| 7 | G | D | -0.1077 | |
| 1 | G | E | -1.3210 | |
| 2 | G | E | -1.8384 | |
| 3 | G | E | -2.1208 | |
| 4 | H | E | -1.9612 | |
| 5 | K | E | -1.9618 | |
| 6 | F | E | 0.4839 | |
| 7 | G | E | -0.3131 | |
| 1 | G | F | -1.3130 | |
| 2 | G | F | -1.8231 | |
| 3 | G | F | -1.9000 | |
| 4 | H | F | -1.8455 | |
| 5 | K | F | -1.8721 | |
| 6 | F | F | 0.5094 | |
| 7 | G | F | -0.4520 | |
| 1 | G | G | -1.3524 | |
| 2 | G | G | -1.9256 | |
| 3 | G | G | -2.4287 | |
| 4 | H | G | -2.3267 | |
| 5 | K | G | -1.9864 | |
| 6 | F | G | 0.3863 | |
| 7 | G | G | -0.2569 | |
| 1 | G | H | -1.3593 | |
| 2 | G | H | -1.9611 | |
| 3 | G | H | -2.3376 | |
| 4 | H | H | -2.4592 | |
| 5 | K | H | -2.0389 | |
| 6 | F | H | 0.4256 | |
| 7 | G | H | -0.1965 | |
| 1 | G | I | -1.3067 | |
| 2 | G | I | -1.9688 | |
| 3 | G | I | -2.3340 | |
| 4 | H | I | -2.3914 | |
| 5 | K | I | -2.1950 | |
| 6 | F | I | 0.2303 | |
| 7 | G | I | -0.1652 | |
| 1 | G | J | -1.3135 | |
| 2 | G | J | 0.0000 | |
| 3 | G | J | -2.1761 | |
| 4 | H | J | -2.3098 | |
| 5 | K | J | -1.9249 | |
| 6 | F | J | 0.4139 | |
| 7 | G | J | -0.2588 | |
| 1 | G | K | -1.2682 | |
| 2 | G | K | -1.8988 | |
| 3 | G | K | -2.1349 | |
| 4 | H | K | -1.8468 | |
| 5 | K | K | -1.8448 | |
| 6 | F | K | 0.5902 | |
| 7 | G | K | -0.1409 | |
| 1 | G | L | -1.3659 | |
| 2 | G | L | -1.7896 | |
| 3 | G | L | -2.1285 | |
| 4 | H | L | -2.1655 | |
| 5 | K | L | -1.8219 | |
| 6 | F | L | 0.5729 | |
| 7 | G | L | -0.1260 |