| Chain sequence(s) |
H: EVQLVETGGGLVQPKGSLKLSCAASGFTFNITAMNWVRQAPGKGLEWVARIRSKSNNYATNYADSVKDRFTISRDDSQSILYLQMNNLKTEDTAMYYCVRGGSPYAMDYWGQGTSVTVSS
L: DIVMTQSPATLSVTPGDRVSLSCRASQSISDFLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLSINNVEPEDVGVYYCQNGHSFPPTFGAGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:02)
[INFO] Main: Simulation completed successfully. (00:01:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.0225 | |
| 2 | V | H | -1.0495 | |
| 3 | Q | H | -0.8640 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 1.2715 | |
| 6 | E | H | 0.0000 | |
| 7 | T | H | -0.1336 | |
| 8 | G | H | -0.6289 | |
| 9 | G | H | -0.2566 | |
| 11 | G | H | 0.4155 | |
| 12 | L | H | 1.1633 | |
| 13 | V | H | -0.1804 | |
| 14 | Q | H | -1.7060 | |
| 15 | P | H | -2.2942 | |
| 16 | K | H | -3.1124 | |
| 17 | G | H | -1.8989 | |
| 18 | S | H | -1.6134 | |
| 19 | L | H | -0.7436 | |
| 20 | K | H | -1.2677 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.0119 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | 0.3435 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.6913 | |
| 27 | G | H | -1.1296 | |
| 28 | F | H | -0.2337 | |
| 29 | T | H | 0.2646 | |
| 30 | F | H | 0.0000 | |
| 35 | N | H | -0.6554 | |
| 36 | I | H | 0.8963 | |
| 37 | T | H | 0.1997 | |
| 38 | A | H | -0.5146 | |
| 39 | M | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.8735 | |
| 45 | A | H | -1.2475 | |
| 46 | P | H | -1.0177 | |
| 47 | G | H | -1.4538 | |
| 48 | K | H | -2.1748 | |
| 49 | G | H | -1.1699 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8951 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | R | H | -0.1806 | |
| 56 | I | H | 0.0000 | |
| 57 | R | H | -1.5456 | |
| 58 | S | H | 0.0000 | |
| 59 | K | H | -2.4727 | |
| 60 | S | H | -1.7669 | |
| 61 | N | H | -2.3935 | |
| 62 | N | H | -2.5026 | |
| 63 | Y | H | -1.5693 | |
| 64 | A | H | -1.1171 | |
| 65 | T | H | -0.4422 | |
| 66 | N | H | 0.0000 | |
| 67 | Y | H | -0.7290 | |
| 68 | A | H | -1.1650 | |
| 69 | D | H | -2.4800 | |
| 70 | S | H | -1.8049 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.6548 | |
| 74 | D | H | -2.9181 | |
| 75 | R | H | -2.4323 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.9480 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.3224 | |
| 80 | R | H | -0.8403 | |
| 81 | D | H | -1.0400 | |
| 82 | D | H | -1.1961 | |
| 83 | S | H | -1.1738 | |
| 84 | Q | H | -1.5467 | |
| 85 | S | H | -0.9498 | |
| 86 | I | H | -0.2326 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2385 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.9935 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -2.2043 | |
| 93 | N | H | -3.0168 | |
| 94 | L | H | 0.0000 | |
| 95 | K | H | -2.6596 | |
| 96 | T | H | -1.8571 | |
| 97 | E | H | -2.2255 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6931 | |
| 100 | A | H | 0.0000 | |
| 101 | M | H | -0.0633 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | V | H | 0.0000 | |
| 106 | R | H | -0.2464 | |
| 107 | G | H | 0.0000 | |
| 108 | G | H | 0.2184 | |
| 109 | S | H | 0.0067 | |
| 110 | P | H | 0.6099 | |
| 113 | Y | H | 1.0372 | |
| 114 | A | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.2377 | |
| 117 | Y | H | 0.2176 | |
| 118 | W | H | -0.0079 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.0624 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.2024 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0786 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.8313 | |
| 128 | S | H | -0.7091 | |
| 1 | D | L | -1.1644 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.8312 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.4830 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.6353 | |
| 8 | P | L | -0.3280 | |
| 9 | A | L | -0.2216 | |
| 10 | T | L | -0.4131 | |
| 11 | L | L | -0.3422 | |
| 12 | S | L | -0.6603 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -1.5315 | |
| 15 | P | L | -1.6431 | |
| 16 | G | L | -2.0536 | |
| 17 | D | L | -2.5879 | |
| 18 | R | L | -3.0952 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.8391 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.9363 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.4141 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.9185 | |
| 27 | Q | L | -1.4244 | |
| 28 | S | L | -1.3995 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -1.0337 | |
| 37 | D | L | -1.3949 | |
| 38 | F | L | 0.0397 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.6800 | |
| 45 | K | L | -0.9599 | |
| 46 | S | L | -0.9034 | |
| 47 | H | L | -1.6736 | |
| 48 | E | L | -1.6498 | |
| 49 | S | L | -1.0019 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.5788 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | K | L | -0.3644 | |
| 56 | Y | L | -0.3063 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.9148 | |
| 66 | Q | L | -1.1103 | |
| 67 | S | L | -0.6563 | |
| 68 | I | L | -0.2962 | |
| 69 | S | L | -0.2567 | |
| 70 | G | L | -0.4262 | |
| 71 | I | L | -0.1493 | |
| 72 | P | L | -0.2590 | |
| 74 | S | L | -0.6007 | |
| 75 | R | L | -1.2509 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.7245 | |
| 78 | G | L | -0.5958 | |
| 79 | S | L | -0.9022 | |
| 80 | G | L | -1.2560 | |
| 83 | S | L | -1.3479 | |
| 84 | G | L | -1.3610 | |
| 85 | S | L | -1.9811 | |
| 86 | D | L | -2.5260 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.8482 | |
| 89 | L | L | 0.0000 | |
| 90 | S | L | 0.0000 | |
| 91 | I | L | 0.0000 | |
| 92 | N | L | -2.6191 | |
| 93 | N | L | -2.6210 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.5742 | |
| 96 | P | L | -1.0301 | |
| 97 | E | L | -0.9093 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | 0.0889 | |
| 100 | G | L | -0.3130 | |
| 101 | V | L | -0.0033 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | N | L | 0.0000 | |
| 107 | G | L | 0.0000 | |
| 108 | H | L | -0.2832 | |
| 109 | S | L | 0.2812 | |
| 114 | F | L | 1.3976 | |
| 115 | P | L | 0.3193 | |
| 116 | P | L | 0.1649 | |
| 117 | T | L | 0.1773 | |
| 118 | F | L | 0.3179 | |
| 119 | G | L | 0.0000 | |
| 120 | A | L | -0.1744 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.8008 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.6608 | |
| 126 | L | L | -0.7795 | |
| 127 | K | L | -1.7041 |