| Chain sequence(s) |
A: FEFEFKFK
C: FEFEFKFK B: FEFEFKFK D: FEFEFKFK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:47)
[INFO] Main: Simulation completed successfully. (00:02:48)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.5659 | |
| 2 | E | A | 0.0886 | |
| 3 | F | A | 0.9510 | |
| 4 | E | A | -0.1335 | |
| 5 | F | A | 1.1547 | |
| 6 | K | A | -0.4067 | |
| 7 | F | A | 0.7456 | |
| 8 | K | A | -0.5259 | |
| 1 | F | B | 1.4709 | |
| 2 | E | B | -0.1926 | |
| 3 | F | B | 0.6949 | |
| 4 | E | B | -0.3603 | |
| 5 | F | B | 1.1281 | |
| 6 | K | B | -0.3599 | |
| 7 | F | B | 0.8855 | |
| 8 | K | B | -0.4403 | |
| 1 | F | C | 1.3971 | |
| 2 | E | C | -0.3801 | |
| 3 | F | C | 1.3330 | |
| 4 | E | C | 0.0121 | |
| 5 | F | C | 1.5492 | |
| 6 | K | C | -0.0262 | |
| 7 | F | C | 1.1909 | |
| 8 | K | C | -0.6769 | |
| 1 | F | D | 1.2972 | |
| 2 | E | D | -0.6480 | |
| 3 | F | D | 1.1518 | |
| 4 | E | D | -0.1178 | |
| 5 | F | D | 1.8064 | |
| 6 | K | D | 0.2506 | |
| 7 | F | D | 1.4072 | |
| 8 | K | D | -0.5688 |