| Chain sequence(s) |
A: KGHKGHK
C: KGHKGHK B: KGHKGHK E: KGHKGHK D: KGHKGHK G: KGHKGHK F: KGHKGHK I: KGHKGHK H: KGHKGHK K: KGHKGHK J: KGHKGHK M: KGHKGHK L: KGHKGHK O: KGHKGHK N: KGHKGHK Q: KGHKGHK P: KGHKGHK S: KGHKGHK R: KGHKGHK T: KGHKGHK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:16:05)
[INFO] Main: Simulation completed successfully. (00:16:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -4.0016 | |
| 2 | G | A | 0.0000 | |
| 3 | H | A | -4.6089 | |
| 4 | K | A | -4.5578 | |
| 5 | G | A | -2.9321 | |
| 6 | H | A | -2.4279 | |
| 7 | K | A | -2.5509 | |
| 1 | K | B | -4.9623 | |
| 2 | G | B | 0.0000 | |
| 3 | H | B | -4.5310 | |
| 4 | K | B | -4.2938 | |
| 5 | G | B | -3.9430 | |
| 6 | H | B | -4.0031 | |
| 7 | K | B | -4.0357 | |
| 1 | K | C | -3.3969 | |
| 2 | G | C | 0.0000 | |
| 3 | H | C | -2.6300 | |
| 4 | K | C | -3.1387 | |
| 5 | G | C | -2.4591 | |
| 6 | H | C | -2.4928 | |
| 7 | K | C | -2.3776 | |
| 1 | K | D | -3.1562 | |
| 2 | G | D | -3.4258 | |
| 3 | H | D | -3.2127 | |
| 4 | K | D | -3.7540 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -4.5277 | |
| 7 | K | D | -4.6867 | |
| 1 | K | E | -3.0922 | |
| 2 | G | E | -3.5698 | |
| 3 | H | E | -3.6023 | |
| 4 | K | E | -3.7324 | |
| 5 | G | E | -2.9752 | |
| 6 | H | E | -2.6050 | |
| 7 | K | E | -3.0501 | |
| 1 | K | F | -2.9420 | |
| 2 | G | F | -3.3119 | |
| 3 | H | F | -3.7586 | |
| 4 | K | F | -4.3855 | |
| 5 | G | F | 0.0000 | |
| 6 | H | F | -3.5465 | |
| 7 | K | F | -4.2909 | |
| 1 | K | G | -4.2764 | |
| 2 | G | G | -3.8242 | |
| 3 | H | G | -3.7066 | |
| 4 | K | G | -4.2105 | |
| 5 | G | G | 0.0000 | |
| 6 | H | G | -2.6998 | |
| 7 | K | G | -2.9454 | |
| 1 | K | H | -5.7314 | |
| 2 | G | H | 0.0000 | |
| 3 | H | H | -4.4789 | |
| 4 | K | H | -3.7644 | |
| 5 | G | H | 0.0000 | |
| 6 | H | H | -3.3035 | |
| 7 | K | H | -2.7146 | |
| 1 | K | I | -4.5559 | |
| 2 | G | I | -4.2728 | |
| 3 | H | I | -4.7729 | |
| 4 | K | I | -5.1931 | |
| 5 | G | I | 0.0000 | |
| 6 | H | I | -4.4283 | |
| 7 | K | I | -4.9915 | |
| 1 | K | J | -4.9338 | |
| 2 | G | J | -4.9951 | |
| 3 | H | J | -4.5052 | |
| 4 | K | J | -3.6865 | |
| 5 | G | J | -2.9484 | |
| 6 | H | J | -3.8377 | |
| 7 | K | J | -4.5474 | |
| 1 | K | K | -2.7184 | |
| 2 | G | K | -3.5478 | |
| 3 | H | K | -3.4312 | |
| 4 | K | K | -4.1739 | |
| 5 | G | K | -3.1593 | |
| 6 | H | K | -2.8664 | |
| 7 | K | K | -3.0254 | |
| 1 | K | L | -4.4601 | |
| 2 | G | L | -3.2420 | |
| 3 | H | L | -4.7510 | |
| 4 | K | L | -4.6714 | |
| 5 | G | L | -4.2772 | |
| 6 | H | L | -3.6483 | |
| 7 | K | L | -2.7803 | |
| 1 | K | M | -3.1968 | |
| 2 | G | M | -2.6200 | |
| 3 | H | M | -3.2187 | |
| 4 | K | M | -4.1977 | |
| 5 | G | M | -3.5663 | |
| 6 | H | M | -4.4911 | |
| 7 | K | M | -3.7700 | |
| 1 | K | N | -3.4301 | |
| 2 | G | N | -3.5105 | |
| 3 | H | N | -3.1606 | |
| 4 | K | N | -4.3883 | |
| 5 | G | N | -2.9989 | |
| 6 | H | N | -3.4210 | |
| 7 | K | N | -3.3476 | |
| 1 | K | O | -3.5047 | |
| 2 | G | O | -3.6348 | |
| 3 | H | O | -3.7471 | |
| 4 | K | O | -4.0935 | |
| 5 | G | O | -3.1201 | |
| 6 | H | O | -2.6735 | |
| 7 | K | O | -2.6578 | |
| 1 | K | P | -2.6122 | |
| 2 | G | P | -3.2289 | |
| 3 | H | P | -3.2187 | |
| 4 | K | P | -4.1020 | |
| 5 | G | P | -3.3780 | |
| 6 | H | P | -2.8158 | |
| 7 | K | P | -2.8519 | |
| 1 | K | Q | -2.6883 | |
| 2 | G | Q | -2.8497 | |
| 3 | H | Q | -3.8135 | |
| 4 | K | Q | -4.9343 | |
| 5 | G | Q | -4.1444 | |
| 6 | H | Q | -3.2900 | |
| 7 | K | Q | -3.4948 | |
| 1 | K | R | -3.8802 | |
| 2 | G | R | -4.5378 | |
| 3 | H | R | -5.2033 | |
| 4 | K | R | -4.6697 | |
| 5 | G | R | -3.8817 | |
| 6 | H | R | -4.4213 | |
| 7 | K | R | -3.9976 | |
| 1 | K | S | -3.0328 | |
| 2 | G | S | -3.3036 | |
| 3 | H | S | -3.3019 | |
| 4 | K | S | -4.1467 | |
| 5 | G | S | -3.8590 | |
| 6 | H | S | -3.9606 | |
| 7 | K | S | -3.6671 | |
| 1 | K | T | -4.3682 | |
| 2 | G | T | -3.6338 | |
| 3 | H | T | -3.3197 | |
| 4 | K | T | -4.1382 | |
| 5 | G | T | 0.0000 | |
| 6 | H | T | -2.7782 | |
| 7 | K | T | -2.8249 |