Project name: KGHKGHK20

Status: done

Started: 2026-02-22 10:20:27
Settings
Chain sequence(s) A: KGHKGHK
C: KGHKGHK
B: KGHKGHK
E: KGHKGHK
D: KGHKGHK
G: KGHKGHK
F: KGHKGHK
I: KGHKGHK
H: KGHKGHK
K: KGHKGHK
J: KGHKGHK
M: KGHKGHK
L: KGHKGHK
O: KGHKGHK
N: KGHKGHK
Q: KGHKGHK
P: KGHKGHK
S: KGHKGHK
R: KGHKGHK
T: KGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:16:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:16:09)
Show buried residues

Minimal score value
-5.7314
Maximal score value
0.0
Average score
-3.4153
Total score value
-478.1436

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -4.0016
2 G A 0.0000
3 H A -4.6089
4 K A -4.5578
5 G A -2.9321
6 H A -2.4279
7 K A -2.5509
1 K B -4.9623
2 G B 0.0000
3 H B -4.5310
4 K B -4.2938
5 G B -3.9430
6 H B -4.0031
7 K B -4.0357
1 K C -3.3969
2 G C 0.0000
3 H C -2.6300
4 K C -3.1387
5 G C -2.4591
6 H C -2.4928
7 K C -2.3776
1 K D -3.1562
2 G D -3.4258
3 H D -3.2127
4 K D -3.7540
5 G D 0.0000
6 H D -4.5277
7 K D -4.6867
1 K E -3.0922
2 G E -3.5698
3 H E -3.6023
4 K E -3.7324
5 G E -2.9752
6 H E -2.6050
7 K E -3.0501
1 K F -2.9420
2 G F -3.3119
3 H F -3.7586
4 K F -4.3855
5 G F 0.0000
6 H F -3.5465
7 K F -4.2909
1 K G -4.2764
2 G G -3.8242
3 H G -3.7066
4 K G -4.2105
5 G G 0.0000
6 H G -2.6998
7 K G -2.9454
1 K H -5.7314
2 G H 0.0000
3 H H -4.4789
4 K H -3.7644
5 G H 0.0000
6 H H -3.3035
7 K H -2.7146
1 K I -4.5559
2 G I -4.2728
3 H I -4.7729
4 K I -5.1931
5 G I 0.0000
6 H I -4.4283
7 K I -4.9915
1 K J -4.9338
2 G J -4.9951
3 H J -4.5052
4 K J -3.6865
5 G J -2.9484
6 H J -3.8377
7 K J -4.5474
1 K K -2.7184
2 G K -3.5478
3 H K -3.4312
4 K K -4.1739
5 G K -3.1593
6 H K -2.8664
7 K K -3.0254
1 K L -4.4601
2 G L -3.2420
3 H L -4.7510
4 K L -4.6714
5 G L -4.2772
6 H L -3.6483
7 K L -2.7803
1 K M -3.1968
2 G M -2.6200
3 H M -3.2187
4 K M -4.1977
5 G M -3.5663
6 H M -4.4911
7 K M -3.7700
1 K N -3.4301
2 G N -3.5105
3 H N -3.1606
4 K N -4.3883
5 G N -2.9989
6 H N -3.4210
7 K N -3.3476
1 K O -3.5047
2 G O -3.6348
3 H O -3.7471
4 K O -4.0935
5 G O -3.1201
6 H O -2.6735
7 K O -2.6578
1 K P -2.6122
2 G P -3.2289
3 H P -3.2187
4 K P -4.1020
5 G P -3.3780
6 H P -2.8158
7 K P -2.8519
1 K Q -2.6883
2 G Q -2.8497
3 H Q -3.8135
4 K Q -4.9343
5 G Q -4.1444
6 H Q -3.2900
7 K Q -3.4948
1 K R -3.8802
2 G R -4.5378
3 H R -5.2033
4 K R -4.6697
5 G R -3.8817
6 H R -4.4213
7 K R -3.9976
1 K S -3.0328
2 G S -3.3036
3 H S -3.3019
4 K S -4.1467
5 G S -3.8590
6 H S -3.9606
7 K S -3.6671
1 K T -4.3682
2 G T -3.6338
3 H T -3.3197
4 K T -4.1382
5 G T 0.0000
6 H T -2.7782
7 K T -2.8249
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Laboratory of Theory of Biopolymers 2018