Project name: obj1 [mutate: LQ11C, WC47C, LI115C, TW117C]

Status: done

Started: 2025-02-10 13:22:25
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues TW117C,LQ11C,WC47C,LI115C
Energy difference between WT (input) and mutated protein (by FoldX) 2.71343 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:35)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-3.324
Maximal score value
2.023
Average score
-0.6702
Total score value
-80.4275

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0063
2 V C -0.9165
3 Q C -1.2443
4 L C 0.0000
5 V C 0.5671
6 E C 0.2706
7 S C -0.3603
8 G C -0.7597
9 G C -0.2708
10 G C -0.0221
11 Q C -0.8745 mutated: LQ11C
12 V C -1.0968
13 Q C -1.7916
14 P C -1.6726
15 G C -1.4104
16 G C -1.2643
17 S C -1.2270
18 L C -1.2813
19 R C -2.1465
20 L C 0.0000
21 S C -0.5421
22 C C 0.0000
23 A C -0.2017
24 A C 0.0000
25 S C -0.2017
26 D C 0.0000
27 F C 1.5458
28 T C 0.2524
29 F C 0.0000
30 R C -2.0330
31 S C -0.8870
32 Y C -1.2169
33 E C -1.1379
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.2034
40 A C -0.8314
41 P C -1.2918
42 G C -1.4348
43 K C -2.1350
44 G C -1.0592
45 L C 0.4680
46 E C -0.2348
47 C C 0.6701 mutated: WC47C
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5371
53 G C -1.2460
54 S C -1.2291
55 G C -1.0820
56 G C -0.7344
57 S C -0.2365
58 T C 0.3551
59 Y C 0.9406
60 Y C -0.1127
61 A C -0.9776
62 D C -2.2977
63 S C -1.7062
64 V C 0.0000
65 K C -2.3272
66 G C -1.6103
67 R C 0.0000
68 F C 0.0000
69 T C -0.6304
70 I C 0.0000
71 S C -0.5622
72 R C -1.3627
73 D C -1.9805
74 N C -2.1902
75 S C -1.7905
76 K C -2.3163
77 N C -1.6491
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6696
81 L C 0.0000
82 Q C -1.2335
83 M C 0.0000
84 N C -1.3326
85 S C -1.2322
86 L C 0.0000
87 R C -2.3607
88 A C -1.7102
89 E C -2.2220
90 D C 0.0000
91 T C 0.0000
92 A C 0.0000
93 I C 1.4079
94 Y C 0.0000
95 Y C 0.7386
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1906
101 D C -3.3240
102 G C -2.0591
103 F C -1.1358
104 N C -2.4023
105 K C -3.1741
106 G C -1.9080
107 F C -1.0045
108 D C -1.1121
109 Y C -0.2179
110 W C 0.5530
111 G C -0.0665
112 Q C -0.8737
113 G C 0.2123
114 T C 0.7852
115 I C 2.0230 mutated: LI115C
116 V C 0.0000
117 W C 0.4136 mutated: TW117C
118 V C 0.0000
119 S C -1.0902
120 S C -0.9768
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Laboratory of Theory of Biopolymers 2018