Project name: query_structure

Status: done

Started: 2026-03-16 23:10:55
Settings
Chain sequence(s) A: ESCVYIPCFTGIAGCSCKSKVCYYNGSVPCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:14)
Show buried residues

Minimal score value
-1.4615
Maximal score value
2.3051
Average score
0.4569
Total score value
14.1642

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -0.1214
2 S A 0.2065
3 C A 0.7836
4 V A 1.1159
5 Y A 1.9055
6 I A 1.8761
7 P A 1.1481
8 C A 1.4424
9 F A 2.3051
10 T A 1.4966
11 G A 1.4846
12 I A 2.2307
13 A A 1.1538
14 G A 0.2483
15 C A 0.0000
16 S A 0.0179
17 C A -0.2853
18 K A -1.4615
19 S A -1.1588
20 K A -1.1980
21 V A -0.4272
22 C A 0.0000
23 Y A 0.1244
24 Y A 0.4033
25 N A -0.8765
26 G A -0.5138
27 S A 0.1433
28 V A 1.4527
29 P A 0.4761
30 C A 0.4424
31 G A -0.2506
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018