Project name: 16abn [mutate: GR16A] [mutate: GA4A]

Status: done

Started: 2024-06-18 19:30:39
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Chain sequence(s) A: KVFGRCELAAAMKRHRLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues GA4A
Energy difference between WT (input) and mutated protein (by FoldX) 0.278747 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:21)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:22)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:44)
Show buried residues

Minimal score value
-3.2912
Maximal score value
0.2155
Average score
-1.1396
Total score value
-147.0076

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.4016
2 V A 0.2019
3 F A 0.0000
4 A A -0.5802 mutated: GA4A
5 R A -1.0330
6 C A -0.8540
7 E A -0.7640
8 L A 0.0000
9 A A 0.0000
10 A A -1.1888
11 A A -1.4833
12 M A 0.0000
13 K A -2.3831
14 R A -2.8307
15 H A -2.5883
16 R A -3.2912
17 L A 0.0000
18 D A -2.4016
19 N A -2.3657
20 Y A -1.9710
21 R A -2.3153
22 G A -1.7552
23 Y A -1.1685
24 S A -1.2259
25 L A 0.0000
26 G A 0.0000
27 N A -1.0846
28 W A 0.0000
29 V A 0.0000
30 C A 0.0000
31 A A 0.0000
32 A A 0.0000
33 K A -1.2797
34 F A -0.7550
35 E A -0.7516
36 S A 0.0000
37 N A -1.3493
38 F A 0.0000
39 N A -1.0703
40 T A 0.0000
41 Q A -1.4445
42 A A -1.1659
43 T A -1.3769
44 N A -1.9868
45 R A -2.7855
46 N A -2.2448
47 T A -1.6406
48 D A -2.4489
49 G A -2.0777
50 S A 0.0000
51 T A 0.0000
52 D A -1.3468
53 Y A 0.0000
54 G A 0.0000
55 I A 0.0000
56 L A 0.0000
57 Q A -0.5930
58 I A 0.0000
59 N A -1.2725
60 S A 0.0000
61 R A -2.3010
62 W A -0.8180
63 W A 0.0000
64 C A 0.0000
65 N A -2.6265
66 D A -2.2124
67 G A -1.8056
68 R A -2.2397
69 T A -2.1708
70 P A -1.6546
71 G A -1.3347
72 S A -2.0796
73 R A -2.4795
74 N A -1.7465
75 L A -0.5200
76 C A -0.9716
77 N A -1.4744
78 I A -0.7933
79 P A -1.1415
80 C A 0.0000
81 S A -0.6200
82 A A -0.4660
83 L A 0.0000
84 L A -1.0421
85 S A -1.3483
86 S A -1.5957
87 D A -2.1200
88 I A 0.0000
89 T A -1.2003
90 A A -0.8682
91 S A 0.0000
92 V A 0.0000
93 N A -1.8992
94 C A 0.0000
95 A A 0.0000
96 K A -2.0152
97 K A -2.0226
98 I A 0.0000
99 V A 0.0000
100 S A -2.2257
101 D A -2.7480
102 G A -2.1484
103 N A -2.1397
104 G A -1.9062
105 M A 0.0000
106 N A -1.3381
107 A A -0.6605
108 W A 0.0000
109 V A 0.2155
110 A A -0.9891
111 W A 0.0000
112 R A -3.0429
113 N A -2.9614
114 R A -3.1432
115 C A 0.0000
116 K A -3.1461
117 G A -2.2479
118 T A -2.3872
119 D A -2.4593
120 V A 0.0000
121 Q A -2.0558
122 A A -1.5836
123 W A -1.0679
124 I A -1.0337
125 R A -2.2189
126 G A -1.4036
127 C A -1.1971
128 R A -1.4647
129 L A -0.0129
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Laboratory of Theory of Biopolymers 2018