| Chain sequence(s) |
P: VLTRVRKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAGKKVLGAFSDGLALDNLKGTFATLSELCDKLVDPENFRLLGNVLVCVLAFGKEFTPPVQAAYQKVVAGVANALAKYVLTPVEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAGKKVLGAFSDGLALDNLKGTFATLSELCDKLVDPENFRLLGNVLVCVLAFGKEFTPPVQAAYQKVVAGVANALAKY
input PDB |
| Selected Chain(s) | P |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | RE7P,RP5P |
| Energy difference between WT (input) and mutated protein (by FoldX) | -2.90543 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with P chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:06:54)
[INFO] FoldX: Starting FoldX energy minimalization (00:07:48)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:10:36)
[INFO] Main: Simulation completed successfully. (00:10:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | P | 1.7728 | |
| 3 | L | P | 0.4242 | |
| 4 | T | P | -0.0191 | |
| 5 | P | P | -0.0050 | mutated: RP5P |
| 6 | V | P | 1.6788 | |
| 7 | E | P | -0.0450 | mutated: RE7P |
| 8 | K | P | -0.7515 | |
| 9 | S | P | -0.3290 | |
| 10 | A | P | -0.0558 | |
| 11 | V | P | 0.0000 | |
| 12 | T | P | -0.0450 | |
| 13 | A | P | 0.0411 | |
| 14 | L | P | 0.0000 | |
| 15 | W | P | 0.0337 | |
| 16 | G | P | -0.7549 | |
| 17 | K | P | -1.7462 | |
| 18 | V | P | -0.3398 | |
| 19 | N | P | -1.1461 | |
| 20 | V | P | -0.0389 | |
| 21 | D | P | -1.4076 | |
| 22 | E | P | -2.0046 | |
| 23 | V | P | 0.0000 | |
| 24 | G | P | 0.0000 | |
| 25 | G | P | -0.3542 | |
| 26 | E | P | -0.6021 | |
| 27 | A | P | 0.0000 | |
| 28 | L | P | 0.0000 | |
| 29 | G | P | 0.0000 | |
| 30 | R | P | -1.1798 | |
| 31 | L | P | 0.0000 | |
| 32 | L | P | 0.0000 | |
| 33 | V | P | 0.6600 | |
| 34 | V | P | 1.9073 | |
| 35 | Y | P | 0.5521 | |
| 36 | P | P | -0.0533 | |
| 37 | W | P | 0.7954 | |
| 38 | T | P | 0.0000 | |
| 39 | Q | P | -0.5998 | |
| 40 | R | P | -1.7582 | |
| 41 | F | P | 0.4780 | |
| 42 | F | P | 0.2527 | |
| 43 | E | P | -1.7775 | |
| 44 | S | P | -0.4846 | |
| 45 | F | P | 0.2198 | |
| 46 | G | P | -0.7342 | |
| 47 | D | P | -1.8760 | |
| 48 | L | P | 0.0000 | |
| 49 | S | P | -0.2208 | |
| 50 | T | P | -0.1177 | |
| 51 | P | P | -0.5332 | |
| 52 | D | P | -1.8231 | |
| 53 | A | P | -0.3153 | |
| 54 | V | P | 0.0000 | |
| 55 | M | P | 0.4086 | |
| 56 | G | P | -0.3747 | |
| 57 | N | P | 0.0000 | |
| 58 | P | P | -0.4926 | |
| 59 | K | P | -1.3400 | |
| 60 | V | P | 0.0000 | |
| 61 | K | P | -1.1971 | |
| 62 | A | P | -0.3314 | |
| 64 | G | P | 0.0000 | |
| 65 | K | P | -1.6637 | |
| 66 | K | P | -1.7834 | |
| 67 | V | P | 0.6012 | |
| 68 | L | P | 0.0000 | |
| 69 | G | P | -0.3789 | |
| 70 | A | P | -0.2045 | |
| 71 | F | P | 0.0000 | |
| 72 | S | P | -0.3707 | |
| 73 | D | P | -1.7954 | |
| 74 | G | P | 0.0000 | |
| 75 | L | P | 0.1631 | |
| 76 | A | P | 0.0865 | |
| 78 | L | P | -0.1423 | |
| 79 | D | P | -1.9902 | |
| 80 | N | P | -1.6038 | |
| 81 | L | P | 0.0000 | |
| 82 | K | P | -1.7776 | |
| 83 | G | P | -0.7406 | |
| 84 | T | P | -0.1181 | |
| 85 | F | P | 0.0000 | |
| 86 | A | P | 0.0003 | |
| 87 | T | P | 0.0312 | |
| 88 | L | P | 0.5800 | |
| 89 | S | P | 0.0000 | |
| 90 | E | P | -1.4928 | |
| 91 | L | P | 0.2409 | |
| 93 | C | P | 0.0692 | |
| 94 | D | P | -2.0307 | |
| 95 | K | P | -1.7467 | |
| 96 | L | P | 1.2326 | |
| 98 | V | P | 0.0919 | |
| 99 | D | P | -1.7246 | |
| 100 | P | P | -0.6394 | |
| 101 | E | P | -1.4315 | |
| 102 | N | P | -0.3292 | |
| 103 | F | P | -0.0456 | |
| 104 | R | P | -1.7501 | |
| 105 | L | P | -0.1011 | |
| 106 | L | P | 0.2476 | |
| 107 | G | P | 0.0000 | |
| 108 | N | P | -1.0228 | |
| 109 | V | P | 0.0000 | |
| 110 | L | P | 0.0000 | |
| 111 | V | P | 0.0000 | |
| 112 | C | P | 0.7826 | |
| 113 | V | P | 0.4119 | |
| 114 | L | P | 0.0000 | |
| 115 | A | P | 0.0573 | |
| 118 | F | P | 1.1028 | |
| 119 | G | P | -0.5611 | |
| 120 | K | P | -1.9758 | |
| 121 | E | P | -1.3546 | |
| 122 | F | P | 0.0000 | |
| 123 | T | P | -0.0709 | |
| 124 | P | P | -0.3064 | |
| 125 | P | P | -0.2642 | |
| 126 | V | P | 0.0207 | |
| 127 | Q | P | -0.7182 | |
| 128 | A | P | -0.1815 | |
| 129 | A | P | 0.0000 | |
| 130 | Y | P | 0.0000 | |
| 131 | Q | P | -0.9137 | |
| 132 | K | P | -1.1537 | |
| 133 | V | P | 0.0000 | |
| 134 | V | P | 0.0000 | |
| 135 | A | P | 0.0104 | |
| 136 | G | P | -0.0453 | |
| 137 | V | P | 0.0000 | |
| 138 | A | P | 0.0000 | |
| 139 | N | P | -1.2730 | |
| 140 | A | P | 0.0000 | |
| 141 | L | P | 0.1724 | |
| 142 | A | P | 0.0538 | |
| 144 | K | P | -1.5406 | |
| 145 | Y | P | 0.5544 | |
| 1 | V | P | 1.7728 | |
| 3 | L | P | 0.3923 | |
| 4 | T | P | -0.0342 | |
| 5 | P | P | 0.0573 | mutated: RP5P |
| 6 | V | P | 1.6823 | |
| 7 | E | P | -0.0145 | mutated: RE7P |
| 8 | K | P | -0.5927 | |
| 9 | S | P | -0.2850 | |
| 10 | A | P | -0.0252 | |
| 11 | V | P | 0.0000 | |
| 12 | T | P | -0.0331 | |
| 13 | A | P | 0.0674 | |
| 14 | L | P | 0.1587 | |
| 15 | W | P | 0.0000 | |
| 16 | G | P | -0.7759 | |
| 17 | K | P | -1.7486 | |
| 18 | V | P | -0.3490 | |
| 19 | N | P | -1.1790 | |
| 20 | V | P | -0.2282 | |
| 21 | D | P | -2.0968 | |
| 22 | E | P | -2.1010 | |
| 23 | V | P | -0.1193 | |
| 24 | G | P | 0.0000 | |
| 25 | G | P | -0.4424 | |
| 26 | E | P | -1.0924 | |
| 27 | A | P | 0.0000 | |
| 28 | L | P | 0.1492 | |
| 29 | G | P | 0.0000 | |
| 30 | R | P | -1.1740 | |
| 31 | L | P | 0.0000 | |
| 32 | L | P | 0.0000 | |
| 33 | V | P | 0.6564 | |
| 34 | V | P | 1.9308 | |
| 35 | Y | P | 0.6850 | |
| 36 | P | P | -0.0822 | |
| 37 | W | P | 0.4877 | |
| 38 | T | P | 0.0000 | |
| 39 | Q | P | -0.6081 | |
| 40 | R | P | -1.7468 | |
| 41 | F | P | 0.5460 | |
| 42 | F | P | 0.2967 | |
| 43 | E | P | -1.7705 | |
| 44 | S | P | -0.4879 | |
| 45 | F | P | 0.2021 | |
| 46 | G | P | -0.7358 | |
| 47 | D | P | -1.8753 | |
| 48 | L | P | 0.0000 | |
| 49 | S | P | -0.2179 | |
| 50 | T | P | -0.1042 | |
| 51 | P | P | -0.5435 | |
| 52 | D | P | -1.8258 | |
| 53 | A | P | -0.3149 | |
| 54 | V | P | 0.0000 | |
| 55 | M | P | 0.3330 | |
| 56 | G | P | -0.3892 | |
| 57 | N | P | 0.0000 | |
| 58 | P | P | -0.5685 | |
| 59 | K | P | -1.7470 | |
| 60 | V | P | 0.0000 | |
| 61 | K | P | -1.2227 | |
| 62 | A | P | -0.2011 | |
| 64 | G | P | 0.0000 | |
| 65 | K | P | -1.3437 | |
| 66 | K | P | -1.6969 | |
| 67 | V | P | 0.5464 | |
| 68 | L | P | 0.0000 | |
| 69 | G | P | -0.1831 | |
| 70 | A | P | -0.0199 | |
| 71 | F | P | 0.0000 | |
| 72 | S | P | -0.3934 | |
| 73 | D | P | -1.7982 | |
| 74 | G | P | 0.0000 | |
| 75 | L | P | 0.0000 | |
| 76 | A | P | 0.0585 | |
| 78 | L | P | -0.1391 | |
| 79 | D | P | -1.9909 | |
| 80 | N | P | -1.6061 | |
| 81 | L | P | 0.0000 | |
| 82 | K | P | -1.7875 | |
| 83 | G | P | -0.7922 | |
| 84 | T | P | -0.1240 | |
| 85 | F | P | 0.0000 | |
| 86 | A | P | 0.0015 | |
| 87 | T | P | 0.0362 | |
| 88 | L | P | 0.6314 | |
| 89 | S | P | 0.0000 | |
| 90 | E | P | -1.1186 | |
| 91 | L | P | 0.5038 | |
| 93 | C | P | 0.0216 | |
| 94 | D | P | -2.0376 | |
| 95 | K | P | -1.7435 | |
| 96 | L | P | 1.2346 | |
| 98 | V | P | 0.0861 | |
| 99 | D | P | -1.5998 | |
| 100 | P | P | -0.6124 | |
| 101 | E | P | -1.5014 | |
| 102 | N | P | 0.0000 | |
| 103 | F | P | 0.1567 | |
| 104 | R | P | -0.7263 | |
| 105 | L | P | 0.1414 | |
| 106 | L | P | 0.2461 | |
| 107 | G | P | 0.0000 | |
| 108 | N | P | -0.9509 | |
| 109 | V | P | 0.0000 | |
| 110 | L | P | 0.0000 | |
| 111 | V | P | 0.0000 | |
| 112 | C | P | 0.7818 | |
| 113 | V | P | 0.4083 | |
| 114 | L | P | 0.0000 | |
| 115 | A | P | 0.0519 | |
| 118 | F | P | 0.6017 | |
| 119 | G | P | -0.6516 | |
| 120 | K | P | -2.1181 | |
| 121 | E | P | -2.1302 | |
| 122 | F | P | 0.0000 | |
| 123 | T | P | -0.0698 | |
| 124 | P | P | -0.3053 | |
| 125 | P | P | -0.2558 | |
| 126 | V | P | 0.0700 | |
| 127 | Q | P | -0.6818 | |
| 128 | A | P | -0.0943 | |
| 129 | A | P | 0.0000 | |
| 130 | Y | P | 0.0000 | |
| 131 | Q | P | -0.9259 | |
| 132 | K | P | -1.1158 | |
| 133 | V | P | 0.0000 | |
| 134 | V | P | 0.0000 | |
| 135 | A | P | 0.0141 | |
| 136 | G | P | 0.0000 | |
| 137 | V | P | 0.0000 | |
| 138 | A | P | 0.0000 | |
| 139 | N | P | -0.5010 | |
| 140 | A | P | 0.0000 | |
| 141 | L | P | 0.1983 | |
| 142 | A | P | 0.0506 | |
| 144 | K | P | -1.4829 | |
| 145 | Y | P | 0.8660 |