Project name: query_structure

Status: done

Started: 2026-03-16 20:32:13
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWDIDEQRDWFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVYHVYRSSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-4.1076
Maximal score value
1.9081
Average score
-0.8118
Total score value
-74.6847

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.5748
2 P A -0.5185
3 A A -0.9516
4 P A 0.0000
5 K A -2.4153
6 N A -2.0183
7 L A -0.6166
8 V A 0.5024
9 V A 0.4374
10 S A -0.6931
11 R A -1.9487
12 V A -0.9222
13 T A -1.7087
14 E A -2.9296
15 D A -2.5297
16 S A -1.9033
17 A A 0.0000
18 R A -1.1660
19 L A 0.0000
20 S A -0.7615
21 W A 0.0000
22 D A -2.6853
23 I A -3.0562
24 D A -3.7996
25 E A -4.1076
26 Q A -3.5958
27 R A -3.9736
28 D A -3.7292
29 W A -1.9581
30 F A 0.0000
31 D A -1.9457
32 S A -1.0647
33 F A 0.0000
34 L A 0.7965
35 I A 0.0000
36 Q A 0.6350
37 Y A 0.4721
38 Q A -0.6437
39 E A -1.5914
40 S A -1.3198
41 E A -2.4117
42 K A -1.7401
43 V A 0.0791
44 G A -0.8979
45 E A -1.7166
46 A A -0.2258
47 I A 0.9885
48 V A 1.9081
49 L A 1.3260
50 T A 0.5271
51 V A 0.0000
52 P A -1.1041
53 G A 0.0000
54 S A -1.5987
55 E A -1.7249
56 R A -1.3031
57 S A -0.8556
58 Y A -0.6367
59 D A -1.3536
60 L A 0.0000
61 T A -1.3097
62 G A -1.4330
63 L A 0.0000
64 K A -2.8797
65 P A -2.4130
66 G A -1.7267
67 T A -2.0115
68 E A -1.5052
69 Y A 0.0000
70 T A 0.1392
71 V A 0.0000
72 S A 0.2911
73 I A 0.0000
74 Y A -0.0182
75 G A 0.0000
76 V A 0.0199
77 Y A -0.2329
78 H A -0.2082
79 V A 1.5384
80 Y A 1.3157
81 R A -0.2350
82 S A -0.2217
83 S A 0.0000
84 N A -1.0926
85 P A -0.7637
86 L A -0.6093
87 S A 0.0395
88 A A 1.0729
89 I A 1.8379
90 F A 0.0000
91 T A -0.6387
92 T A -1.7646
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Laboratory of Theory of Biopolymers 2018