Project name: query_structure

Status: done

Started: 2026-03-17 01:19:18
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAGWYEVEYYRITYGETGGNSPVQEFTVPGSSSTATISGLKPGVDYTITVYAWQWRYYYNPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:17)
Show buried residues

Minimal score value
-2.622
Maximal score value
2.059
Average score
-0.4525
Total score value
-40.7206

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 2.0590
2 S A 0.8946
3 S A 0.7778
4 V A 0.2637
5 P A 0.0000
6 T A -1.6611
7 K A -2.6220
8 L A 0.0000
9 E A -1.9258
10 V A 0.0878
11 V A 1.5223
12 A A 0.8787
13 A A 0.3116
14 T A -0.3505
15 P A -1.1208
16 T A -1.0063
17 S A -0.5545
18 L A 0.0000
19 L A 0.6922
20 I A 0.0000
21 S A -0.7955
22 W A 0.0000
23 D A -2.3797
24 A A -0.8630
25 G A 0.4890
26 W A 1.5424
27 Y A 0.9516
28 E A -1.1961
29 V A -0.7814
30 E A -1.6966
31 Y A -0.7435
32 Y A 0.0000
33 R A -0.5859
34 I A 0.0000
35 T A 0.0000
36 Y A 0.0000
37 G A 0.0000
38 E A -1.6024
39 T A -1.3123
40 G A -1.2632
41 G A -1.4502
42 N A -1.5471
43 S A -0.8567
44 P A -0.3402
45 V A 0.3826
46 Q A -0.9353
47 E A -1.7269
48 F A -0.7094
49 T A -0.2362
50 V A -0.1915
51 P A -0.6141
52 G A -1.0315
53 S A -0.8258
54 S A -0.5548
55 S A -0.5883
56 T A -0.2473
57 A A 0.0000
58 T A 0.2875
59 I A 0.0000
60 S A -0.6758
61 G A -1.0360
62 L A 0.0000
63 K A -2.3831
64 P A -1.6780
65 G A -1.4747
66 V A -1.4666
67 D A -2.2031
68 Y A 0.0000
69 T A -0.8402
70 I A 0.0000
71 T A -0.3567
72 V A 0.0000
73 Y A 0.2613
74 A A 0.0000
75 W A 0.2840
76 Q A 0.1554
77 W A 0.3589
78 R A -0.3272
79 Y A 1.3057
80 Y A 1.6169
81 Y A 0.5429
82 N A -0.5819
83 P A -0.2143
84 I A -0.1312
85 S A -0.6230
86 I A -0.7220
87 N A -1.7618
88 Y A -1.4991
89 R A -2.5658
90 T A -1.5301
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018