| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYQKYMEWYRQAPGKEREWVAAIESNGWWTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGNNWQYYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:26)
[INFO] Main: Simulation completed successfully. (00:01:27)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2964 | |
| 2 | V | A | -0.4761 | |
| 3 | Q | A | -0.7065 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1105 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5776 | |
| 8 | G | A | -1.0428 | |
| 9 | G | A | -0.7907 | |
| 10 | G | A | -0.0139 | |
| 11 | L | A | 1.0307 | |
| 12 | V | A | 0.0250 | |
| 13 | Q | A | -1.2213 | |
| 14 | A | A | -1.4173 | |
| 15 | G | A | -1.3403 | |
| 16 | G | A | -0.8865 | |
| 17 | S | A | -1.2221 | |
| 18 | L | A | -0.9232 | |
| 19 | R | A | -2.1415 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3750 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0814 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5355 | |
| 26 | G | A | -0.8188 | |
| 27 | F | A | -0.3866 | |
| 28 | P | A | -0.6215 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | -0.2865 | |
| 31 | Q | A | -1.1571 | |
| 32 | K | A | -0.7003 | |
| 33 | Y | A | -0.1918 | |
| 34 | M | A | 0.0000 | |
| 35 | E | A | 0.0076 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.2838 | |
| 38 | R | A | -1.0701 | |
| 39 | Q | A | -1.9445 | |
| 40 | A | A | -1.9710 | |
| 41 | P | A | -1.4036 | |
| 42 | G | A | -1.9382 | |
| 43 | K | A | -3.2891 | |
| 44 | E | A | -3.3740 | |
| 45 | R | A | -2.3629 | |
| 46 | E | A | -1.5571 | |
| 47 | W | A | -0.4127 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.4611 | |
| 51 | I | A | 0.0000 | |
| 52 | E | A | -0.0612 | |
| 53 | S | A | -0.5237 | |
| 54 | N | A | -0.8055 | |
| 55 | G | A | -0.1562 | |
| 56 | W | A | 1.1700 | |
| 57 | W | A | 1.5765 | |
| 58 | T | A | 1.1602 | |
| 59 | Y | A | 0.6783 | |
| 60 | Y | A | -0.4751 | |
| 61 | A | A | -1.1298 | |
| 62 | D | A | -2.3231 | |
| 63 | S | A | -1.7673 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5157 | |
| 66 | G | A | -1.8005 | |
| 67 | R | A | -1.5164 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7667 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4819 | |
| 72 | R | A | -1.2074 | |
| 73 | D | A | -1.7764 | |
| 74 | N | A | -2.0844 | |
| 75 | A | A | -1.5631 | |
| 76 | K | A | -2.4646 | |
| 77 | N | A | -1.5854 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6999 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2423 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4625 | |
| 85 | S | A | -1.2399 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.3122 | |
| 88 | P | A | -1.9081 | |
| 89 | E | A | -2.3379 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9471 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4508 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.0896 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -0.6625 | |
| 100 | D | A | -0.2892 | |
| 101 | Y | A | 0.2802 | |
| 102 | G | A | -0.4242 | |
| 103 | N | A | -1.5524 | |
| 104 | N | A | -1.3824 | |
| 105 | W | A | 0.3119 | |
| 106 | Q | A | -0.4071 | |
| 107 | Y | A | 0.8260 | |
| 108 | Y | A | 0.6321 | |
| 109 | D | A | -1.0198 | |
| 110 | Y | A | -0.1973 | |
| 111 | W | A | 0.0511 | |
| 112 | G | A | 0.0801 | |
| 113 | Q | A | -0.8993 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | -0.6593 | |
| 116 | Q | A | -1.1220 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.2657 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7407 |