| Chain sequence(s) |
H: QVQLVQSGAEVKKPGSSVKVSCKASGGTFSNYAISWVRQAPGQGLEWMGRIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCARGYYEARHYYYYYAMDVWGQGTAVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQSISSYLSWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTITSLQPEDFATYYCQQSYSTPRTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:21)
[INFO] Main: Simulation completed successfully. (00:01:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5154 | |
| 2 | V | H | -1.0169 | |
| 3 | Q | H | -1.1558 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.2429 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.5862 | |
| 8 | G | H | -0.6054 | |
| 9 | A | H | 0.0292 | |
| 11 | E | H | 0.0556 | |
| 12 | V | H | 0.9924 | |
| 13 | K | H | -0.8929 | |
| 14 | K | H | -2.1780 | |
| 15 | P | H | -2.0777 | |
| 16 | G | H | -1.6331 | |
| 17 | S | H | -1.2710 | |
| 18 | S | H | -1.4094 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -2.0049 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.5002 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.6595 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.8276 | |
| 27 | G | H | -1.1840 | |
| 28 | G | H | -0.9922 | |
| 29 | T | H | -0.8899 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.0463 | |
| 36 | N | H | -0.0353 | |
| 37 | Y | H | 0.1422 | |
| 38 | A | H | 0.0000 | |
| 39 | I | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.5401 | |
| 45 | A | H | -0.9504 | |
| 46 | P | H | -0.9875 | |
| 47 | G | H | -1.2149 | |
| 48 | Q | H | -1.8215 | |
| 49 | G | H | -1.2902 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.5951 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | 0.0218 | |
| 56 | I | H | 0.0000 | |
| 57 | I | H | 0.0000 | |
| 58 | P | H | 0.0000 | |
| 59 | I | H | 1.9655 | |
| 62 | L | H | 2.4154 | |
| 63 | G | H | 1.2999 | |
| 64 | I | H | 2.0128 | |
| 65 | A | H | 0.7253 | |
| 66 | N | H | -0.1548 | |
| 67 | Y | H | -0.6823 | |
| 68 | A | H | 0.0000 | |
| 69 | Q | H | -2.2277 | |
| 70 | K | H | -2.4825 | |
| 71 | F | H | 0.0000 | |
| 72 | Q | H | -2.2643 | |
| 74 | G | H | -1.5889 | |
| 75 | R | H | -1.4955 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.8206 | |
| 78 | I | H | 0.0000 | |
| 79 | T | H | -0.2127 | |
| 80 | A | H | -0.2808 | |
| 81 | D | H | -1.4289 | |
| 82 | K | H | -1.6637 | |
| 83 | S | H | -1.2641 | |
| 84 | T | H | -1.0137 | |
| 85 | S | H | 0.0000 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.4519 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.4288 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.2111 | |
| 93 | S | H | -1.3156 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.1249 | |
| 96 | S | H | -2.3498 | |
| 97 | E | H | -2.4993 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.8278 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.2272 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.1600 | |
| 107 | G | H | 0.0000 | |
| 108 | Y | H | 0.2536 | |
| 109 | Y | H | 0.0603 | |
| 110 | E | H | -0.7360 | |
| 111 | A | H | -0.8577 | |
| 111A | R | H | -1.5514 | |
| 111B | H | H | -0.1348 | |
| 112C | Y | H | 1.5119 | |
| 112B | Y | H | 2.0230 | |
| 112A | Y | H | 1.5236 | |
| 112 | Y | H | 1.7205 | |
| 113 | Y | H | 1.2671 | |
| 114 | A | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.4610 | |
| 117 | V | H | 0.0000 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4757 | |
| 121 | G | H | -0.7399 | |
| 122 | T | H | 0.0000 | |
| 123 | A | H | 0.1725 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.2385 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.2926 | |
| 128 | S | H | -1.2553 | |
| 1 | D | L | -2.3721 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.3024 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3994 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7412 | |
| 8 | P | L | -0.7128 | |
| 9 | S | L | -0.9988 | |
| 10 | S | L | -1.3738 | |
| 11 | L | L | -0.9260 | |
| 12 | S | L | -1.0570 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.1582 | |
| 15 | V | L | 0.8025 | |
| 16 | G | L | -0.4846 | |
| 17 | D | L | -1.3929 | |
| 18 | R | L | -2.1024 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5759 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7765 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.6825 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.9532 | |
| 27 | Q | L | -2.0580 | |
| 28 | S | L | -1.1012 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.3494 | |
| 37 | S | L | -0.0803 | |
| 38 | Y | L | 0.8529 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.9688 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.8204 | |
| 46 | P | L | -1.2506 | |
| 47 | G | L | -1.6250 | |
| 48 | K | L | -2.5940 | |
| 49 | A | L | -1.6446 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.5081 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.6248 | |
| 56 | A | L | 0.7184 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2234 | |
| 66 | S | L | 0.2448 | |
| 67 | L | L | 0.2520 | |
| 68 | Q | L | -0.3239 | |
| 69 | S | L | -0.4572 | |
| 70 | G | L | -0.5849 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.3966 | |
| 74 | S | L | -0.4162 | |
| 75 | R | L | -0.6785 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.2507 | |
| 78 | G | L | -0.2235 | |
| 79 | S | L | -0.5938 | |
| 80 | G | L | -0.9977 | |
| 83 | S | L | -0.9345 | |
| 84 | G | L | -1.0412 | |
| 85 | T | L | -1.6045 | |
| 86 | D | L | -1.8947 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6958 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5548 | |
| 91 | I | L | 0.0000 | |
| 92 | T | L | -1.1357 | |
| 93 | S | L | -0.9862 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.9482 | |
| 96 | P | L | -0.6140 | |
| 97 | E | L | -1.8759 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.7125 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | 0.0000 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | Y | L | 0.9387 | |
| 109 | S | L | 0.0418 | |
| 114 | T | L | -0.4126 | |
| 115 | P | L | -0.8153 | |
| 116 | R | L | 0.0000 | |
| 117 | T | L | -0.7333 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.5684 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.2174 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.6255 | |
| 126 | I | L | 0.4362 | |
| 127 | K | L | -0.9776 |