Project name: ap2_3ddesign11

Status: done

Started: 2025-07-24 19:59:26
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGSASGIRSWGWFRQAPGQGLEAVAVISDTRPPEVSPRYDPSRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASVPGLEAEANEPFRESWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:54)
Show buried residues

Minimal score value
-2.9477
Maximal score value
1.7218
Average score
-0.7136
Total score value
-88.4824

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.6730
2 V A -0.8792
3 Q A -0.9744
4 L A 0.0000
5 V A 0.9096
6 E A 0.3221
7 S A -0.2531
8 G A -0.7213
9 G A 0.0661
10 G A 0.8592
11 L A 1.3432
12 V A 0.0000
13 Q A -1.4337
14 P A -1.6596
15 G A -1.4062
16 G A -0.9759
17 S A -1.2680
18 L A -0.9889
19 R A -2.2176
20 L A 0.0000
21 S A -0.5401
22 C A 0.0000
23 A A -0.3645
24 A A 0.0000
25 S A -0.5378
26 G A -0.6929
27 S A -0.9144
28 A A 0.0000
29 S A -1.3173
30 G A -1.0702
31 I A 0.0000
32 R A -1.8759
33 S A -1.2890
34 W A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.5962
38 R A 0.2087
39 Q A -0.2141
40 A A -0.6349
41 P A -0.9323
42 G A -0.8576
43 Q A -0.8902
44 G A -0.4717
45 L A 0.6278
46 E A -0.1735
47 A A 0.0248
48 V A 0.0000
49 A A 0.0000
50 V A -0.4646
51 I A 0.0000
52 S A -2.2328
53 D A -2.9216
54 T A -2.1317
55 R A -2.9477
56 P A -1.9915
57 P A -1.8123
58 E A -2.1227
59 V A -1.2159
60 S A -1.1801
61 P A -1.5391
62 R A -2.1998
63 Y A 0.0000
64 D A -1.6134
65 P A -1.3123
66 S A -0.7175
67 R A 0.0000
68 F A 0.0000
69 T A -0.9446
70 I A 0.0000
71 S A -0.6026
72 R A -1.4650
73 D A -2.0703
74 N A -2.4048
75 S A -1.9686
76 K A -2.6093
77 N A -2.0820
78 T A 0.0000
79 L A 0.0000
80 Y A -0.7890
81 L A 0.0000
82 Q A -1.4122
83 M A 0.0000
84 N A -1.3239
85 S A -1.1171
86 L A 0.0000
87 R A -2.4140
88 A A -1.8107
89 E A -2.2956
90 D A 0.0000
91 T A -0.4278
92 A A 0.0000
93 V A 0.9540
94 Y A 0.0000
95 Y A 0.5346
96 C A 0.0000
97 A A 0.0000
98 S A 0.0000
99 V A -0.2645
100 P A -0.6379
101 G A -0.9922
102 L A 0.0466
103 E A -1.6041
104 A A -1.6545
105 E A -2.6233
106 A A -1.4614
107 N A -2.0564
108 E A -1.9346
109 P A -0.8386
110 F A 0.4685
111 R A -1.3329
112 E A -0.9930
113 S A 0.0000
114 W A -0.0232
115 G A -0.1131
116 Q A -0.8708
117 G A 0.0922
118 T A 0.5772
119 L A 1.7218
120 V A 0.0000
121 T A 0.3550
122 V A 0.0000
123 S A -0.6591
124 S A -0.7626
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Laboratory of Theory of Biopolymers 2018