| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTDYWMHWVRQAPGQGLEWMGYINPSSGFTKYHQNFKDRVTMTRDTSISTAYMELSRLRSDDTAVYYCARQYDYDEDWYFDVWGQGTTVTVSS
L: DIVMSQSPSSLSASVGDRVTITCKSSQSLLNSRTRKNFLAWYQQKPGKSPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQPEDFATYYCKQSFNLFTFGQGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:19)
[INFO] Main: Simulation completed successfully. (00:01:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.3116 | |
| 2 | V | H | -0.5774 | |
| 3 | Q | H | -1.1368 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4358 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.5452 | |
| 8 | G | H | -0.5583 | |
| 9 | A | H | 0.0183 | |
| 11 | E | H | 0.0667 | |
| 12 | V | H | 0.9601 | |
| 13 | K | H | -0.9043 | |
| 14 | K | H | -2.3803 | |
| 15 | P | H | -2.5761 | |
| 16 | G | H | -2.3310 | |
| 17 | A | H | -1.8025 | |
| 18 | S | H | -1.7940 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.8443 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.5880 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.6351 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.5231 | |
| 27 | G | H | -0.8386 | |
| 28 | Y | H | -0.4641 | |
| 29 | T | H | -0.4316 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.0154 | |
| 36 | D | H | -1.3401 | |
| 37 | Y | H | -0.1268 | |
| 38 | W | H | 0.4088 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | -0.4599 | |
| 44 | Q | H | -0.7060 | |
| 45 | A | H | -1.0228 | |
| 46 | P | H | -1.0181 | |
| 47 | G | H | -1.2365 | |
| 48 | Q | H | -1.8496 | |
| 49 | G | H | -1.3349 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8893 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.2799 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | 0.0000 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.5499 | |
| 62 | S | H | -0.0519 | |
| 63 | G | H | 0.3687 | |
| 64 | F | H | 1.3810 | |
| 65 | T | H | 0.4737 | |
| 66 | K | H | -0.6147 | |
| 67 | Y | H | -1.2681 | |
| 68 | H | H | 0.0000 | |
| 69 | Q | H | -2.8707 | |
| 70 | N | H | -2.5654 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.4453 | |
| 74 | D | H | -3.2948 | |
| 75 | R | H | -2.2601 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -1.0109 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.2359 | |
| 80 | R | H | -0.7285 | |
| 81 | D | H | -0.7715 | |
| 82 | T | H | -0.3486 | |
| 83 | S | H | 0.2366 | |
| 84 | I | H | 0.9929 | |
| 85 | S | H | 0.0192 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.7276 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.1811 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.9851 | |
| 93 | R | H | -2.9783 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.3661 | |
| 96 | S | H | -2.2925 | |
| 97 | D | H | -2.3096 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.8345 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0672 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | Q | H | 0.0000 | |
| 108 | Y | H | 0.4301 | |
| 109 | D | H | -0.1677 | |
| 110 | Y | H | 0.1089 | |
| 111 | D | H | -1.4325 | |
| 112A | E | H | -0.9841 | |
| 112 | D | H | 0.0000 | |
| 113 | W | H | 0.2904 | |
| 114 | Y | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.0481 | |
| 117 | V | H | -0.0342 | |
| 118 | W | H | -0.3452 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3826 | |
| 121 | G | H | -0.7136 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.0363 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.2699 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.2414 | |
| 128 | S | H | -1.0608 | |
| 1 | D | L | -1.8001 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.7283 | |
| 4 | M | L | 0.0000 | |
| 5 | S | L | -0.6086 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.6884 | |
| 8 | P | L | -0.7060 | |
| 9 | S | L | -0.9812 | |
| 10 | S | L | -1.2049 | |
| 11 | L | L | -0.6967 | |
| 12 | S | L | -0.8309 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.1267 | |
| 15 | V | L | 0.7693 | |
| 16 | G | L | -0.4170 | |
| 17 | D | L | -1.4087 | |
| 18 | R | L | -2.0743 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5794 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7058 | |
| 23 | C | L | 0.0000 | |
| 24 | K | L | -1.6719 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.8726 | |
| 27 | Q | L | -1.6110 | |
| 28 | S | L | -0.9623 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | -0.7243 | |
| 31 | N | L | 0.0000 | |
| 32 | S | L | -1.7377 | |
| 33 | R | L | -2.5085 | |
| 34 | T | L | -1.9934 | |
| 35 | R | L | -2.5355 | |
| 36 | K | L | -1.3357 | |
| 37 | N | L | 0.0000 | |
| 38 | F | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.9014 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.8074 | |
| 46 | P | L | -1.2962 | |
| 47 | G | L | -1.6447 | |
| 48 | K | L | -2.5826 | |
| 49 | S | L | -1.5709 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.2950 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.0335 | |
| 56 | W | L | -0.0050 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.4710 | |
| 66 | T | L | -0.4510 | |
| 67 | R | L | -1.2205 | |
| 68 | E | L | -0.8192 | |
| 69 | S | L | -0.7000 | |
| 70 | G | L | -0.9056 | |
| 71 | V | L | -0.9840 | |
| 72 | P | L | -1.2692 | |
| 74 | D | L | -2.1560 | |
| 75 | R | L | -1.4832 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.8551 | |
| 78 | G | L | -0.4191 | |
| 79 | S | L | -0.6004 | |
| 80 | G | L | -0.9855 | |
| 83 | S | L | -1.0243 | |
| 84 | G | L | -1.0945 | |
| 85 | T | L | -1.3746 | |
| 86 | D | L | -1.8078 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6471 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5900 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4228 | |
| 93 | S | L | -1.1251 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.5323 | |
| 96 | P | L | -0.6964 | |
| 97 | E | L | -1.8086 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.6891 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -1.2394 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | K | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.1034 | |
| 108 | F | L | -0.0688 | |
| 114 | N | L | -1.1857 | |
| 115 | L | L | -0.2081 | |
| 116 | F | L | 0.0000 | |
| 117 | T | L | -0.0947 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.3407 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.1788 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.2113 | |
| 126 | I | L | 0.7470 | |
| 127 | K | L | -0.8729 |