Project name: Recaticimab

Status: done

Started: 2026-03-22 13:05:20
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTDYWMHWVRQAPGQGLEWMGYINPSSGFTKYHQNFKDRVTMTRDTSISTAYMELSRLRSDDTAVYYCARQYDYDEDWYFDVWGQGTTVTVSS
L: DIVMSQSPSSLSASVGDRVTITCKSSQSLLNSRTRKNFLAWYQQKPGKSPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQPEDFATYYCKQSFNLFTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:20)
Show buried residues

Minimal score value
-3.4453
Maximal score value
1.381
Average score
-0.6055
Total score value
-141.0744

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3116
2 V H -0.5774
3 Q H -1.1368
4 L H 0.0000
5 V H 0.4358
6 Q H 0.0000
7 S H -0.5452
8 G H -0.5583
9 A H 0.0183
11 E H 0.0667
12 V H 0.9601
13 K H -0.9043
14 K H -2.3803
15 P H -2.5761
16 G H -2.3310
17 A H -1.8025
18 S H -1.7940
19 V H 0.0000
20 K H -1.8443
21 V H 0.0000
22 S H -0.5880
23 C H 0.0000
24 K H -0.6351
25 A H 0.0000
26 S H -0.5231
27 G H -0.8386
28 Y H -0.4641
29 T H -0.4316
30 F H 0.0000
35 T H -1.0154
36 D H -1.3401
37 Y H -0.1268
38 W H 0.4088
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.4599
44 Q H -0.7060
45 A H -1.0228
46 P H -1.0181
47 G H -1.2365
48 Q H -1.8496
49 G H -1.3349
50 L H 0.0000
51 E H -0.8893
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 Y H 0.2799
56 I H 0.0000
57 N H 0.0000
58 P H 0.0000
59 S H -0.5499
62 S H -0.0519
63 G H 0.3687
64 F H 1.3810
65 T H 0.4737
66 K H -0.6147
67 Y H -1.2681
68 H H 0.0000
69 Q H -2.8707
70 N H -2.5654
71 F H 0.0000
72 K H -3.4453
74 D H -3.2948
75 R H -2.2601
76 V H 0.0000
77 T H -1.0109
78 M H 0.0000
79 T H -0.2359
80 R H -0.7285
81 D H -0.7715
82 T H -0.3486
83 S H 0.2366
84 I H 0.9929
85 S H 0.0192
86 T H 0.0000
87 A H 0.0000
88 Y H -0.7276
89 M H 0.0000
90 E H -1.1811
91 L H 0.0000
92 S H -1.9851
93 R H -2.9783
94 L H 0.0000
95 R H -3.3661
96 S H -2.2925
97 D H -2.3096
98 D H 0.0000
99 T H -0.8345
100 A H 0.0000
101 V H 0.0672
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 Q H 0.0000
108 Y H 0.4301
109 D H -0.1677
110 Y H 0.1089
111 D H -1.4325
112A E H -0.9841
112 D H 0.0000
113 W H 0.2904
114 Y H 0.0000
115 F H 0.0000
116 D H -0.0481
117 V H -0.0342
118 W H -0.3452
119 G H 0.0000
120 Q H -1.3826
121 G H -0.7136
122 T H 0.0000
123 T H 0.0363
124 V H 0.0000
125 T H -0.2699
126 V H 0.0000
127 S H -1.2414
128 S H -1.0608
1 D L -1.8001
2 I L 0.0000
3 V L 0.7283
4 M L 0.0000
5 S L -0.6086
6 Q L 0.0000
7 S L -0.6884
8 P L -0.7060
9 S L -0.9812
10 S L -1.2049
11 L L -0.6967
12 S L -0.8309
13 A L 0.0000
14 S L -0.1267
15 V L 0.7693
16 G L -0.4170
17 D L -1.4087
18 R L -2.0743
19 V L 0.0000
20 T L -0.5794
21 I L 0.0000
22 T L -0.7058
23 C L 0.0000
24 K L -1.6719
25 S L 0.0000
26 S L -0.8726
27 Q L -1.6110
28 S L -0.9623
29 L L 0.0000
30 L L -0.7243
31 N L 0.0000
32 S L -1.7377
33 R L -2.5085
34 T L -1.9934
35 R L -2.5355
36 K L -1.3357
37 N L 0.0000
38 F L 0.0000
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.9014
44 Q L 0.0000
45 K L -1.8074
46 P L -1.2962
47 G L -1.6447
48 K L -2.5826
49 S L -1.5709
50 P L 0.0000
51 K L -1.2950
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0335
56 W L -0.0050
57 A L 0.0000
65 S L -0.4710
66 T L -0.4510
67 R L -1.2205
68 E L -0.8192
69 S L -0.7000
70 G L -0.9056
71 V L -0.9840
72 P L -1.2692
74 D L -2.1560
75 R L -1.4832
76 F L 0.0000
77 S L -0.8551
78 G L -0.4191
79 S L -0.6004
80 G L -0.9855
83 S L -1.0243
84 G L -1.0945
85 T L -1.3746
86 D L -1.8078
87 F L 0.0000
88 T L -0.6471
89 L L 0.0000
90 T L -0.5900
91 I L 0.0000
92 S L -1.4228
93 S L -1.1251
94 L L 0.0000
95 Q L -0.5323
96 P L -0.6964
97 E L -1.8086
98 D L 0.0000
99 F L -0.6891
100 A L 0.0000
101 T L -1.2394
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 K L 0.0000
106 Q L 0.0000
107 S L 0.1034
108 F L -0.0688
114 N L -1.1857
115 L L -0.2081
116 F L 0.0000
117 T L -0.0947
118 F L 0.0000
119 G L 0.0000
120 Q L -1.3407
121 G L 0.0000
122 T L 0.0000
123 K L -2.1788
124 L L 0.0000
125 E L -1.2113
126 I L 0.7470
127 K L -0.8729
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018