Project name: scFv94

Status: done

Started: 2024-06-15 17:38:28
Settings
Chain sequence(s) H: EVQLQQSGPELVKPGASVKISCKTSGFTFTEYSMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKATLTVDKSSSTAYMELRSLTSEDSAVYYCARESWGQGTTLTVSS
L: DVVMTQTPLTLSVTIGQPASISCKSSQSLLHSDGKTYLNWLLQRPGQSPKRLIYLVSKLDSRIPDRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGTHFPHTFGAGTKLELK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:07)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:07)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:07)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:07)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:15)
Show buried residues

Minimal score value
-3.0203
Maximal score value
1.2614
Average score
-0.6716
Total score value
-149.7738

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0781
2 V H -1.2561
3 Q H -2.1857
4 L H 0.0000
5 Q H -2.1294
6 Q H 0.0000
7 S H -1.0256
8 G H -0.8445
9 P H -0.2250
11 E H 0.1511
12 L H 1.0206
13 V H -0.0641
14 K H -1.6214
15 P H -1.3953
16 G H -1.2092
17 A H -0.9875
18 S H -1.0889
19 V H 0.0000
20 K H -1.1519
21 I H 0.0000
22 S H -0.6342
23 C H 0.0000
24 K H -1.4327
25 T H 0.0000
26 S H -1.2403
27 G H -1.1181
28 F H -0.5678
29 T H -0.6150
30 F H 0.0000
35 T H -1.8480
36 E H -1.9771
37 Y H -1.0008
38 S H -1.0384
39 M H 0.0000
40 H H -0.3773
41 W H 0.0000
42 V H 0.0000
43 K H -0.8909
44 Q H -1.2135
45 S H -1.7487
46 H H -1.9566
47 G H -1.8097
48 K H -2.4723
49 S H -1.4058
50 L H 0.0000
51 E H -1.7658
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 N H -1.5235
58 P H 0.0000
59 N H -2.7236
62 N H -2.2366
63 G H -1.7304
64 G H -1.2967
65 T H -0.5484
66 S H -0.4116
67 Y H -0.8565
68 N H -1.6680
69 Q H -2.6544
70 K H -3.0203
71 F H 0.0000
72 K H -2.8696
74 G H -1.9231
75 K H -1.7969
76 A H 0.0000
77 T H -0.7560
78 L H 0.0000
79 T H -0.1524
80 V H -0.5898
81 D H -1.3894
82 K H -2.0513
83 S H -1.1033
84 S H -0.9064
85 S H -1.0234
86 T H 0.0000
87 A H 0.0000
88 Y H -0.1529
89 M H 0.0000
90 E H -0.8886
91 L H 0.0000
92 R H -1.2320
93 S H -1.0944
94 L H 0.0000
95 T H -1.3349
96 S H -1.4781
97 E H -2.0757
98 D H 0.0000
99 S H -0.7379
100 A H 0.0000
101 V H -0.1386
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.8346
116 E H -0.9701
117 S H -1.0914
118 W H 0.0000
119 G H 0.0000
120 Q H -1.8511
121 G H -0.9394
122 T H 0.0000
123 T H -0.2259
124 L H 0.0000
125 T H -0.0701
126 V H 0.0000
127 S H -0.6498
128 S H -0.7650
1 D L -1.3387
2 V L 0.0000
3 V L 0.8767
4 M L 0.0000
5 T L -0.0038
6 Q L 0.0000
7 T L 0.1773
8 P L 0.4625
9 L L 1.2614
10 T L 0.2747
11 L L 0.0487
12 S L -0.3805
13 V L 0.0000
14 T L -0.8186
15 I L -0.0417
16 G L -1.0687
17 Q L -1.8905
18 P L -1.7397
19 A L 0.0000
20 S L -0.5765
21 I L 0.0000
22 S L -0.5794
23 C L 0.0000
24 K L -1.6043
25 S L 0.0000
26 S L -0.8331
27 Q L -1.4135
28 S L -0.7921
29 L L 0.0000
30 L L 0.3527
31 H L -0.8662
32 S L -1.2262
34 D L -2.1400
35 G L -1.5134
36 K L -1.3544
37 T L -0.1941
38 Y L 0.3672
39 L L 0.0000
40 N L 0.0733
41 W L 0.0000
42 L L 0.0000
43 L L 0.0000
44 Q L -0.8785
45 R L -1.1286
46 P L -0.8339
47 G L -1.0757
48 Q L -1.4414
49 S L -1.1766
50 P L 0.0000
51 K L -1.7383
52 R L -0.9449
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2449
56 L L 0.0945
57 V L 0.0000
65 S L -0.5022
66 K L -0.9097
67 L L -0.6739
68 D L -0.9152
69 S L -1.1610
70 R L -1.9776
71 I L -1.1818
72 P L -1.2460
74 D L -1.9891
75 R L -1.8364
76 F L 0.0000
77 T L -0.9678
78 G L 0.0000
79 S L -0.6832
80 G L -0.9100
83 S L -0.6127
84 G L -0.6185
85 T L -1.2507
86 D L -1.8647
87 F L 0.0000
88 T L -0.7940
89 L L 0.0000
90 K L -1.2703
91 I L 0.0000
92 S L -2.1352
93 R L -2.6422
94 V L 0.0000
95 E L -1.8820
96 A L -1.2497
97 E L -2.0234
98 D L 0.0000
99 L L -0.5132
100 G L -0.6325
101 V L 0.0455
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 W L 0.0983
106 Q L 0.0000
107 G L 0.2421
108 T L 0.0000
109 H L 0.2046
114 F L 1.1618
115 P L -0.0576
116 H L -0.0459
117 T L -0.0569
118 F L 0.0000
119 G L 0.0000
120 A L 0.1438
121 G L 0.0000
122 T L 0.0000
123 K L -0.6383
124 L L 0.0000
125 E L -0.3924
126 L L -0.3957
127 K L -1.3146
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018