Project name: SKGHKGH20

Status: done

Started: 2026-05-21 12:29:29
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Chain sequence(s) A: SKGHKGH
C: SKGHKGH
B: SKGHKGH
E: SKGHKGH
D: SKGHKGH
G: SKGHKGH
F: SKGHKGH
I: SKGHKGH
H: SKGHKGH
K: SKGHKGH
J: SKGHKGH
M: SKGHKGH
L: SKGHKGH
O: SKGHKGH
N: SKGHKGH
Q: SKGHKGH
P: SKGHKGH
S: SKGHKGH
R: SKGHKGH
T: SKGHKGH
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:42)
Show buried residues

Minimal score value
-4.2079
Maximal score value
0.0
Average score
-2.6735
Total score value
-374.2953

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -1.3892
2 K A -3.1648
3 G A 0.0000
4 H A -2.9214
5 K A -2.8417
6 G A -2.3412
7 H A -2.5823
1 S B -1.5963
2 K B -3.0184
3 G B -2.7177
4 H B -3.4491
5 K B -3.7084
6 G B 0.0000
7 H B -3.5564
1 S C -1.3405
2 K C -2.9759
3 G C -2.6266
4 H C -3.2331
5 K C -3.7951
6 G C -2.7574
7 H C -3.7219
1 S D -2.0300
2 K D -3.2498
3 G D -2.7670
4 H D -3.8148
5 K D -3.2348
6 G D -2.8376
7 H D -3.5707
1 S E -1.2006
2 K E -2.8923
3 G E -2.2848
4 H E -2.8562
5 K E -3.5257
6 G E -2.0996
7 H E -1.9365
1 S F -2.8081
2 K F -3.7211
3 G F -3.4288
4 H F -3.2701
5 K F -3.2150
6 G F -2.2230
7 H F -2.2253
1 S G -2.2475
2 K G -3.7461
3 G G 0.0000
4 H G 0.0000
5 K G -2.6113
6 G G -1.9316
7 H G -2.1382
1 S H -1.6232
2 K H -3.1984
3 G H -3.3513
4 H H -3.2531
5 K H -3.3910
6 G H -2.4132
7 H H -2.0651
1 S I -1.5307
2 K I -2.7841
3 G I -2.8972
4 H I -2.9388
5 K I -3.1419
6 G I -2.1745
7 H I -2.5999
1 S J -1.6361
2 K J -2.8333
3 G J -2.6627
4 H J -3.1107
5 K J -2.7522
6 G J -2.1884
7 H J -1.8232
1 S K -1.2994
2 K K -2.7161
3 G K -2.1904
4 H K -2.8761
5 K K -3.7817
6 G K -3.3524
7 H K -3.4133
1 S L -1.2355
2 K L -2.5708
3 G L -2.5915
4 H L -3.0522
5 K L -3.8081
6 G L -3.3697
7 H L -2.9897
1 S M -1.4595
2 K M -3.1776
3 G M -3.4066
4 H M -3.5826
5 K M -3.4888
6 G M -2.1082
7 H M -2.3846
1 S N -1.1791
2 K N -2.5540
3 G N -2.7453
4 H N -3.1012
5 K N -4.1973
6 G N -3.0883
7 H N -3.0359
1 S O -1.2879
2 K O -2.5175
3 G O -2.3093
4 H O -3.1974
5 K O -3.8943
6 G O -3.1315
7 H O -2.9660
1 S P -1.3287
2 K P -2.5199
3 G P -2.8129
4 H P -3.2885
5 K P -3.6839
6 G P -3.6637
7 H P -3.3810
1 S Q -1.2050
2 K Q -2.7608
3 G Q -3.4593
4 H Q -3.7817
5 K Q -4.2079
6 G Q -3.1598
7 H Q -2.5461
1 S R -1.2969
2 K R -2.5549
3 G R -2.4579
4 H R -2.8823
5 K R -3.3226
6 G R -2.5252
7 H R -2.3860
1 S S -2.6692
2 K S -3.2872
3 G S -3.0444
4 H S 0.0000
5 K S -3.8203
6 G S -2.6725
7 H S -2.6194
1 S T -1.3364
2 K T -2.7775
3 G T -2.7027
4 H T -3.4427
5 K T -3.6547
6 G T -2.9625
7 H T -2.0481
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Laboratory of Theory of Biopolymers 2018