Project name: query_structure

Status: done

Started: 2026-03-16 23:19:53
Settings
Chain sequence(s) A: GDLPVCGETCFGGTCNTPGCVCAWPVCTR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:14)
Show buried residues

Minimal score value
-1.1756
Maximal score value
2.051
Average score
0.3816
Total score value
11.0663

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.8741
2 D A -0.9973
3 L A 0.8982
4 P A 0.6067
5 V A 1.2717
6 C A 0.4730
7 G A 0.3217
8 E A -0.0899
9 T A 0.4039
10 C A 0.0000
11 F A 1.9615
12 G A 0.5600
13 G A 0.6614
14 T A 0.3273
15 C A -0.0991
16 N A -1.1756
17 T A -0.9037
18 P A -0.7378
19 G A -0.8115
20 C A -0.0604
21 V A 1.3663
22 C A 1.4777
23 A A 1.4165
24 W A 2.0510
25 P A 1.4696
26 V A 1.6527
27 C A 0.0000
28 T A 0.6867
29 R A -0.7902
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Laboratory of Theory of Biopolymers 2018