| Chain sequence(s) |
A: GTCNTPGCTCSWAVCTRNGLPVCGETCVG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:06)
[INFO] Main: Simulation completed successfully. (00:00:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.3147 | |
| 2 | T | A | 0.1431 | |
| 3 | C | A | -0.2578 | |
| 4 | N | A | -1.1442 | |
| 5 | T | A | -1.0279 | |
| 6 | P | A | -0.8833 | |
| 7 | G | A | -1.0969 | |
| 8 | C | A | -0.6759 | |
| 9 | T | A | -0.4118 | |
| 10 | C | A | 0.3795 | |
| 11 | S | A | 0.7510 | |
| 12 | W | A | 1.5236 | |
| 13 | A | A | 1.1676 | |
| 14 | V | A | 1.3713 | |
| 15 | C | A | 0.0000 | |
| 16 | T | A | 0.0000 | |
| 17 | R | A | -0.8971 | |
| 18 | N | A | -1.3736 | |
| 19 | G | A | -0.4671 | |
| 20 | L | A | 1.0466 | |
| 21 | P | A | 0.7880 | |
| 22 | V | A | 1.4202 | |
| 23 | C | A | 0.3787 | |
| 24 | G | A | 0.0611 | |
| 25 | E | A | -0.0883 | |
| 26 | T | A | 0.3728 | |
| 27 | C | A | 0.8453 | |
| 28 | V | A | 1.0783 | |
| 29 | G | A | 0.2142 |