Project name: query_structure

Status: done

Started: 2026-03-16 23:44:26
Settings
Chain sequence(s) A: GTCNTPGCTCSWAVCTRNGLPVCGETCVG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:06)
Show buried residues

Minimal score value
-1.3736
Maximal score value
1.5236
Average score
0.1218
Total score value
3.5321

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.3147
2 T A 0.1431
3 C A -0.2578
4 N A -1.1442
5 T A -1.0279
6 P A -0.8833
7 G A -1.0969
8 C A -0.6759
9 T A -0.4118
10 C A 0.3795
11 S A 0.7510
12 W A 1.5236
13 A A 1.1676
14 V A 1.3713
15 C A 0.0000
16 T A 0.0000
17 R A -0.8971
18 N A -1.3736
19 G A -0.4671
20 L A 1.0466
21 P A 0.7880
22 V A 1.4202
23 C A 0.3787
24 G A 0.0611
25 E A -0.0883
26 T A 0.3728
27 C A 0.8453
28 V A 1.0783
29 G A 0.2142
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Laboratory of Theory of Biopolymers 2018