Project name: ECD_16_1st

Status: done

Started: 2024-06-18 20:06:39
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVALVEMLKNIMLLLGCTLEESKIKEVLEKPKYINLALEAQFNIMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNLLSKLVKGDLNLSWVMTTCSTICAREKMPDLLEKYSRGIYDGDLKDKVPYKGIEISLELVTKPCTEGIEIKSKRPQLLRPLKKKLEEKVEELTKRVTELSKENVGKSIMFAMTPKILETSSLMPRLGIEKGYEISKKACLNGRCRRTVSLETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMEKQLEEGLKIIEELKKKEKELE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:29)
Show buried residues

Minimal score value
-5.3393
Maximal score value
2.2654
Average score
-1.0833
Total score value
-327.1424

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.5420
2 F A 0.8344
3 T A 0.4523
4 L A -0.0309
5 P A -0.2632
6 P A -1.0670
7 N A -2.2781
8 F A 0.0000
9 G A -1.4884
10 K A -2.3547
11 R A -1.4460
12 P A -0.6550
13 T A -0.4585
14 D A -0.4689
15 L A 1.1972
16 E A 0.4647
17 L A 0.0000
18 S A 1.3625
19 V A 2.0575
20 A A 0.0000
21 L A 0.0000
22 V A 0.6227
23 E A -0.0960
24 M A 0.0000
25 L A 0.0000
26 K A -0.9890
27 N A 0.0000
28 I A -0.4200
29 M A 0.0000
30 L A -0.5089
31 L A -0.7573
32 L A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.1265
36 L A 0.0000
37 E A -2.1966
38 E A -3.2057
39 S A -2.4665
40 K A -2.7020
41 I A -2.1993
42 K A -3.2906
43 E A -3.4970
44 V A 0.0000
45 L A -1.2379
46 E A -2.9758
47 K A -2.8745
48 P A -1.9497
49 K A -2.4584
50 Y A -1.3021
51 I A -1.0337
52 N A -1.9379
53 L A 0.0000
54 A A 0.0000
55 L A -0.5431
56 E A -1.1301
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 N A -0.9958
61 I A 0.0000
62 M A 0.0000
63 P A 0.0000
64 K A -1.9088
65 T A 0.0000
66 A A 0.0000
67 L A -1.2351
68 E A -2.2720
69 L A 0.0000
70 A A 0.0000
71 K A -1.8850
72 V A 0.0912
73 F A -1.1493
74 R A -2.5059
75 L A -1.8764
76 K A -2.5574
77 N A -1.9330
78 I A -0.4884
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.1035
94 L A 0.2682
95 S A 0.0000
96 N A 0.0000
97 L A 0.6863
98 L A 0.0000
99 S A 0.0000
100 K A -1.5676
101 L A -0.1446
102 V A 0.0000
103 K A -2.5528
104 G A 0.0000
105 D A -2.1114
106 L A -0.9732
107 N A -1.1225
108 L A 0.0000
109 S A 0.0000
110 W A -0.2546
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A 0.0000
115 C A 0.0000
116 S A 0.0000
117 T A 0.0000
118 I A 1.0247
119 C A -0.1365
120 A A 0.0000
121 R A -2.4617
122 E A -3.0687
123 K A -2.3930
124 M A 0.0000
125 P A -2.8474
126 D A -3.5174
127 L A 0.0000
128 L A 0.0000
129 E A -3.8613
130 K A -3.4233
131 Y A 0.0000
132 S A 0.0000
133 R A -3.4201
134 G A -2.0107
135 I A -1.5078
136 Y A -1.9766
137 D A -2.6961
138 G A -2.6356
139 D A -3.7530
140 L A 0.0000
141 K A -3.7704
142 D A -3.4583
143 K A -2.7438
144 V A 0.0000
145 P A -1.5709
146 Y A -1.9244
147 K A -2.0140
148 G A -0.7379
149 I A 0.0000
150 E A -2.2646
151 I A -0.3052
152 S A 0.0000
153 L A 0.0000
154 E A -2.0429
155 L A -0.9684
156 V A 0.0000
157 T A 0.0000
158 K A -2.6366
159 P A -1.8969
160 C A 0.0000
161 T A -1.6970
162 E A -2.7903
163 G A 0.0000
164 I A -2.1615
165 E A -3.5276
166 I A -2.3917
167 K A -2.6745
168 S A -2.7945
169 K A -3.2015
170 R A -3.1230
171 P A -2.2978
172 Q A -1.9672
173 L A -0.8646
174 L A 0.0000
175 R A -2.6807
176 P A -2.0162
177 L A -2.0231
178 K A -2.9122
179 K A -4.3432
180 K A -4.3962
181 L A 0.0000
182 E A -4.6922
183 E A -5.1077
184 K A -4.2018
185 V A -3.5706
186 E A -4.6027
187 E A -4.3131
188 L A -2.7958
189 T A -2.7613
190 K A -3.6573
191 R A -3.1972
192 V A 0.0000
193 T A -2.4695
194 E A -3.6539
195 L A 0.0000
196 S A -2.3508
197 K A -3.6357
198 E A -3.4347
199 N A 0.0000
200 V A 0.0000
201 G A -2.2708
202 K A -1.5448
203 S A 0.2663
204 I A 0.6804
205 M A 1.6986
206 F A 2.2654
207 A A 1.4560
208 M A 0.0000
209 T A 0.3579
210 P A -0.4305
211 K A -1.3103
212 I A 0.0000
213 L A -0.0439
214 E A -1.2796
215 T A 0.0000
216 S A 0.0000
217 S A -0.9136
218 L A -0.0251
219 M A 0.0000
220 P A 0.0000
221 R A -1.1703
222 L A -0.4113
223 G A 0.0000
224 I A 0.0000
225 E A -1.7711
226 K A -1.7295
227 G A 0.0000
228 Y A -1.5091
229 E A -2.8177
230 I A -1.8892
231 S A 0.0000
232 K A -2.7673
233 K A -2.4638
234 A A -1.4789
235 C A -0.8538
236 L A 0.0000
237 N A -2.2281
238 G A -2.2762
239 R A -3.0842
240 C A 0.0000
241 R A -2.0813
242 R A -1.7751
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 L A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.1450
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.5404
262 V A 1.7486
263 A A 0.2489
264 F A 0.0000
265 P A -0.1121
266 P A -0.7889
267 E A -1.4240
268 V A 0.5914
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.0000
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.2083
278 L A 0.0600
279 Y A 0.0000
280 M A -0.6979
281 E A -2.0624
282 K A -1.6083
283 Q A 0.0000
284 L A -0.9104
285 E A -2.1126
286 E A 0.0000
287 G A 0.0000
288 L A -0.6084
289 K A -2.0757
290 I A -1.3009
291 I A -1.8166
292 E A -3.8262
293 E A -4.1356
294 L A -3.5607
295 K A -4.9195
296 K A -5.3393
297 K A -5.0721
298 E A -5.1181
299 K A -4.8392
300 E A -4.0818
301 L A -1.8974
302 E A -2.8085
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Laboratory of Theory of Biopolymers 2018