| Chain sequence(s) |
A: KLDLKLDLKLDL
C: KLDLKLDLKLDL B: KLDLKLDLKLDL E: KLDLKLDLKLDL D: KLDLKLDLKLDL G: KLDLKLDLKLDL F: KLDLKLDLKLDL I: KLDLKLDLKLDL H: KLDLKLDLKLDL K: KLDLKLDLKLDL J: KLDLKLDLKLDL L: KLDLKLDLKLDL input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (01:08:08)
[INFO] Main: Simulation completed successfully. (01:08:12)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -1.6096 | |
| 2 | L | A | 0.0000 | |
| 3 | D | A | 0.0000 | |
| 4 | L | A | 0.0000 | |
| 5 | K | A | -2.0595 | |
| 6 | L | A | 0.0000 | |
| 7 | D | A | 0.0000 | |
| 8 | L | A | 0.0000 | |
| 9 | K | A | -1.8980 | |
| 10 | L | A | 0.0000 | |
| 11 | D | A | 0.0000 | |
| 12 | L | A | 0.7027 | |
| 1 | K | B | -1.3375 | |
| 2 | L | B | 0.0000 | |
| 3 | D | B | 0.0000 | |
| 4 | L | B | 0.0000 | |
| 5 | K | B | -1.8584 | |
| 6 | L | B | 0.0000 | |
| 7 | D | B | 0.0000 | |
| 8 | L | B | 0.0000 | |
| 9 | K | B | -2.2360 | |
| 10 | L | B | 0.0000 | |
| 11 | D | B | -1.8083 | |
| 12 | L | B | 0.5589 | |
| 1 | K | C | -1.9346 | |
| 2 | L | C | 0.0000 | |
| 3 | D | C | 0.0000 | |
| 4 | L | C | 0.0000 | |
| 5 | K | C | -2.0385 | |
| 6 | L | C | 0.0000 | |
| 7 | D | C | 0.0000 | |
| 8 | L | C | 0.0000 | |
| 9 | K | C | -1.6748 | |
| 10 | L | C | 0.0000 | |
| 11 | D | C | 0.0000 | |
| 12 | L | C | 0.0000 | |
| 1 | K | D | -1.6986 | |
| 2 | L | D | 0.0000 | |
| 3 | D | D | 0.0000 | |
| 4 | L | D | 0.0000 | |
| 5 | K | D | -1.7230 | |
| 6 | L | D | 0.0000 | |
| 7 | D | D | 0.0000 | |
| 8 | L | D | 0.0000 | |
| 9 | K | D | -2.5078 | |
| 10 | L | D | 0.0000 | |
| 11 | D | D | 0.0000 | |
| 12 | L | D | 1.0329 | |
| 1 | K | E | -1.2456 | |
| 2 | L | E | 0.0000 | |
| 3 | D | E | -2.4260 | |
| 4 | L | E | 0.0000 | |
| 5 | K | E | -1.4711 | |
| 6 | L | E | 0.0000 | |
| 7 | D | E | 0.0000 | |
| 8 | L | E | 0.0000 | |
| 9 | K | E | -1.8190 | |
| 10 | L | E | 0.0000 | |
| 11 | D | E | -1.8091 | |
| 12 | L | E | 0.2274 | |
| 1 | K | F | -1.8507 | |
| 2 | L | F | -0.9390 | |
| 3 | D | F | -1.5095 | |
| 4 | L | F | -0.5566 | |
| 5 | K | F | -1.7550 | |
| 6 | L | F | -0.5609 | |
| 7 | D | F | -1.2635 | |
| 8 | L | F | -0.9533 | |
| 9 | K | F | -2.2546 | |
| 10 | L | F | -0.9851 | |
| 11 | D | F | -0.9649 | |
| 12 | L | F | 1.2017 | |
| 1 | K | G | -1.9204 | |
| 2 | L | G | -1.0370 | |
| 3 | D | G | -1.6251 | |
| 4 | L | G | -0.8046 | |
| 5 | K | G | -1.6576 | |
| 6 | L | G | -0.7643 | |
| 7 | D | G | -1.2587 | |
| 8 | L | G | -0.4622 | |
| 9 | K | G | -1.1567 | |
| 10 | L | G | -0.4127 | |
| 11 | D | G | -0.4786 | |
| 12 | L | G | 1.2632 | |
| 1 | K | H | -0.9401 | |
| 2 | L | H | 0.0000 | |
| 3 | D | H | 0.0000 | |
| 4 | L | H | 0.0000 | |
| 5 | K | H | -1.6840 | |
| 6 | L | H | 0.0000 | |
| 7 | D | H | 0.0000 | |
| 8 | L | H | 0.0000 | |
| 9 | K | H | -2.0713 | |
| 10 | L | H | 0.0000 | |
| 11 | D | H | -2.0138 | |
| 12 | L | H | 0.3022 | |
| 1 | K | I | -1.5536 | |
| 2 | L | I | 0.0000 | |
| 3 | D | I | -2.4862 | |
| 4 | L | I | 0.0000 | |
| 5 | K | I | -1.8547 | |
| 6 | L | I | 0.0000 | |
| 7 | D | I | 0.0000 | |
| 8 | L | I | 0.0000 | |
| 9 | K | I | -1.6911 | |
| 10 | L | I | 0.0000 | |
| 11 | D | I | -1.6388 | |
| 12 | L | I | 0.3712 | |
| 1 | K | J | -1.5545 | |
| 2 | L | J | 0.0000 | |
| 3 | D | J | 0.0000 | |
| 4 | L | J | 0.0000 | |
| 5 | K | J | -1.6138 | |
| 6 | L | J | 0.0000 | |
| 7 | D | J | 0.0000 | |
| 8 | L | J | 0.0000 | |
| 9 | K | J | -2.5263 | |
| 10 | L | J | 0.0000 | |
| 11 | D | J | 0.0000 | |
| 12 | L | J | 0.6182 | |
| 1 | K | K | -1.8397 | |
| 2 | L | K | -1.2691 | |
| 3 | D | K | -2.5116 | |
| 4 | L | K | -0.9734 | |
| 5 | K | K | -1.9845 | |
| 6 | L | K | -0.6447 | |
| 7 | D | K | -1.5715 | |
| 8 | L | K | -0.4777 | |
| 9 | K | K | -1.2596 | |
| 10 | L | K | -0.5459 | |
| 11 | D | K | -1.5203 | |
| 12 | L | K | 0.7457 | |
| 1 | K | L | -1.8353 | |
| 2 | L | L | -0.8824 | |
| 3 | D | L | -2.2846 | |
| 4 | L | L | -0.9667 | |
| 5 | K | L | -2.1361 | |
| 6 | L | L | -0.9905 | |
| 7 | D | L | -2.1220 | |
| 8 | L | L | -1.1578 | |
| 9 | K | L | -2.2829 | |
| 10 | L | L | -1.0036 | |
| 11 | D | L | -1.3678 | |
| 12 | L | L | 0.9844 |