Project name: KLD-12_12

Status: done

Started: 2026-06-25 02:02:57
Settings
Chain sequence(s) A: KLDLKLDLKLDL
C: KLDLKLDLKLDL
B: KLDLKLDLKLDL
E: KLDLKLDLKLDL
D: KLDLKLDLKLDL
G: KLDLKLDLKLDL
F: KLDLKLDLKLDL
I: KLDLKLDLKLDL
H: KLDLKLDLKLDL
K: KLDLKLDLKLDL
J: KLDLKLDLKLDL
L: KLDLKLDLKLDL
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (01:08:08)
[INFO]       Main:     Simulation completed successfully.                                          (01:08:12)
Show buried residues

Minimal score value
-2.5263
Maximal score value
1.2632
Average score
-0.7193
Total score value
-103.5738

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.6096
2 L A 0.0000
3 D A 0.0000
4 L A 0.0000
5 K A -2.0595
6 L A 0.0000
7 D A 0.0000
8 L A 0.0000
9 K A -1.8980
10 L A 0.0000
11 D A 0.0000
12 L A 0.7027
1 K B -1.3375
2 L B 0.0000
3 D B 0.0000
4 L B 0.0000
5 K B -1.8584
6 L B 0.0000
7 D B 0.0000
8 L B 0.0000
9 K B -2.2360
10 L B 0.0000
11 D B -1.8083
12 L B 0.5589
1 K C -1.9346
2 L C 0.0000
3 D C 0.0000
4 L C 0.0000
5 K C -2.0385
6 L C 0.0000
7 D C 0.0000
8 L C 0.0000
9 K C -1.6748
10 L C 0.0000
11 D C 0.0000
12 L C 0.0000
1 K D -1.6986
2 L D 0.0000
3 D D 0.0000
4 L D 0.0000
5 K D -1.7230
6 L D 0.0000
7 D D 0.0000
8 L D 0.0000
9 K D -2.5078
10 L D 0.0000
11 D D 0.0000
12 L D 1.0329
1 K E -1.2456
2 L E 0.0000
3 D E -2.4260
4 L E 0.0000
5 K E -1.4711
6 L E 0.0000
7 D E 0.0000
8 L E 0.0000
9 K E -1.8190
10 L E 0.0000
11 D E -1.8091
12 L E 0.2274
1 K F -1.8507
2 L F -0.9390
3 D F -1.5095
4 L F -0.5566
5 K F -1.7550
6 L F -0.5609
7 D F -1.2635
8 L F -0.9533
9 K F -2.2546
10 L F -0.9851
11 D F -0.9649
12 L F 1.2017
1 K G -1.9204
2 L G -1.0370
3 D G -1.6251
4 L G -0.8046
5 K G -1.6576
6 L G -0.7643
7 D G -1.2587
8 L G -0.4622
9 K G -1.1567
10 L G -0.4127
11 D G -0.4786
12 L G 1.2632
1 K H -0.9401
2 L H 0.0000
3 D H 0.0000
4 L H 0.0000
5 K H -1.6840
6 L H 0.0000
7 D H 0.0000
8 L H 0.0000
9 K H -2.0713
10 L H 0.0000
11 D H -2.0138
12 L H 0.3022
1 K I -1.5536
2 L I 0.0000
3 D I -2.4862
4 L I 0.0000
5 K I -1.8547
6 L I 0.0000
7 D I 0.0000
8 L I 0.0000
9 K I -1.6911
10 L I 0.0000
11 D I -1.6388
12 L I 0.3712
1 K J -1.5545
2 L J 0.0000
3 D J 0.0000
4 L J 0.0000
5 K J -1.6138
6 L J 0.0000
7 D J 0.0000
8 L J 0.0000
9 K J -2.5263
10 L J 0.0000
11 D J 0.0000
12 L J 0.6182
1 K K -1.8397
2 L K -1.2691
3 D K -2.5116
4 L K -0.9734
5 K K -1.9845
6 L K -0.6447
7 D K -1.5715
8 L K -0.4777
9 K K -1.2596
10 L K -0.5459
11 D K -1.5203
12 L K 0.7457
1 K L -1.8353
2 L L -0.8824
3 D L -2.2846
4 L L -0.9667
5 K L -2.1361
6 L L -0.9905
7 D L -2.1220
8 L L -1.1578
9 K L -2.2829
10 L L -1.0036
11 D L -1.3678
12 L L 0.9844
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Laboratory of Theory of Biopolymers 2018