Project name: VHL_D73Y

Status: done

Started: 2026-01-10 20:21:58
Settings
Chain sequence(s) A: MEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHYGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:42)
Show buried residues

Minimal score value
-4.3932
Maximal score value
1.8862
Average score
-1.1418
Total score value
-182.6811

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1223
2 E A -1.7251
3 A A -1.2567
4 G A -2.1210
5 R A -2.9697
6 P A -2.0375
7 R A -2.5947
8 P A -1.3543
9 V A -0.0749
10 L A 0.0000
11 R A -0.6779
12 S A 0.0000
13 V A 0.6346
14 N A -1.1099
15 S A -1.9095
16 R A -2.9956
17 E A -3.0923
18 P A -2.1780
19 S A 0.0000
20 Q A -1.7610
21 V A 0.0000
22 I A -1.0689
23 F A 0.0000
24 C A -1.3006
25 N A 0.0000
26 R A -2.2056
27 S A 0.0000
28 P A -0.9890
29 R A -0.9479
30 V A -0.1529
31 V A 0.0000
32 L A 0.0815
33 P A 0.0000
34 V A 0.0000
35 W A -0.2971
36 L A 0.0000
37 N A -1.0444
38 F A -0.7404
39 D A -2.1881
40 G A -1.7191
41 E A -2.6282
42 P A -1.5152
43 Q A -0.9454
44 P A -0.4181
45 Y A 0.1937
46 P A -0.2464
47 T A -0.0751
48 L A 0.0000
49 P A -0.6237
50 P A -1.0905
51 G A -1.2984
52 T A -1.1878
53 G A -1.9683
54 R A -2.7680
55 R A -2.8658
56 I A -1.8150
57 H A -1.7518
58 S A 0.0000
59 Y A -1.6203
60 R A -2.0462
61 G A -0.4347
62 H A 0.0000
63 L A 0.0000
64 W A 0.0000
65 L A 0.0000
66 F A 0.0000
67 R A 0.0000
68 D A 0.0000
69 A A -0.3025
70 G A -0.5365
71 T A -0.7672
72 H A -0.8490
73 Y A -0.5549
74 G A -0.5099
75 L A 0.0000
76 L A -0.7206
77 V A 0.0000
78 N A -1.6320
79 Q A -1.8847
80 T A -1.5897
81 E A -1.8719
82 L A 0.0000
83 F A 0.0000
84 V A 1.1970
85 P A 0.0000
86 S A -0.2013
87 L A -0.4306
88 N A -0.7602
89 V A 0.4075
90 D A -1.5452
91 G A -1.4872
92 Q A -1.4715
93 P A -0.7872
94 I A 0.3095
95 F A 0.3030
96 A A 0.0000
97 N A -0.9874
98 I A 0.0000
99 T A -0.7318
100 L A 0.4064
101 P A 0.8424
102 V A 1.8862
103 Y A 0.6004
104 T A 0.1543
105 L A 0.4484
106 K A -1.2082
107 E A -1.3801
108 R A -1.2969
109 C A -0.5438
110 L A 0.0000
111 Q A -0.4213
112 V A 0.4363
113 V A 0.5203
114 R A -0.2120
115 S A 0.4923
116 L A 1.3515
117 V A -0.2500
118 K A -2.1702
119 P A -2.4626
120 E A -3.4910
121 N A -3.1565
122 Y A 0.0000
123 R A -3.2338
124 R A -3.1157
125 L A -1.6661
126 D A -1.8171
127 I A -0.0866
128 V A 0.7707
129 R A -1.5899
130 S A -0.9425
131 L A -1.2555
132 Y A 0.0000
133 E A -3.6966
134 D A -3.1312
135 L A 0.0000
136 E A -4.0715
137 D A -3.8046
138 H A -2.9061
139 P A -2.0098
140 N A -2.3012
141 V A -2.0866
142 Q A -3.2625
143 K A -3.8359
144 D A -3.2739
145 L A 0.0000
146 E A -4.2357
147 R A -4.3932
148 L A -3.0570
149 T A -2.6172
150 Q A -3.3948
151 E A -3.8455
152 R A -3.2352
153 I A -1.6847
154 A A -2.2273
155 H A -2.9809
156 Q A -3.2480
157 R A -2.9005
158 M A -1.2260
159 G A -2.0269
160 D A -2.6545
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Laboratory of Theory of Biopolymers 2018