| Chain sequence(s) |
H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYAMHWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYSGSGYDYYFSPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:00)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | Q | H | -1.3202 | |
| 1 | V | H | -0.6603 | |
| 2 | Q | H | -0.7863 | |
| 3 | L | H | 0.0000 | |
| 4 | V | H | 1.4094 | |
| 5 | E | H | 0.0000 | |
| 6 | S | H | -0.1168 | |
| 7 | G | H | -0.7689 | |
| 8 | G | H | 0.1467 | |
| 9 | G | H | 0.9357 | |
| 10 | V | H | 1.5578 | |
| 11 | V | H | 0.0000 | |
| 12 | Q | H | -1.7854 | |
| 13 | P | H | -1.9044 | |
| 14 | G | H | -2.0580 | |
| 15 | E | H | -2.2305 | |
| 16 | S | H | -1.6169 | |
| 17 | L | H | -1.0046 | |
| 18 | K | H | -1.9370 | |
| 19 | I | H | 0.0000 | |
| 20 | S | H | -0.3146 | |
| 21 | C | H | 0.0000 | |
| 22 | A | H | 0.0337 | |
| 23 | A | H | 0.0000 | |
| 24 | S | H | -0.5579 | |
| 25 | G | H | -0.8650 | |
| 26 | F | H | -0.3016 | |
| 27 | T | H | -0.1827 | |
| 28 | F | H | 0.0000 | |
| 29 | S | H | -0.8178 | |
| 30 | S | H | -0.0829 | |
| 31 | Y | H | 0.2925 | |
| 32 | A | H | 0.1588 | |
| 33 | M | H | 0.0000 | |
| 34 | H | H | 0.0000 | |
| 35 | W | H | 0.0000 | |
| 36 | V | H | 0.0000 | |
| 37 | R | H | 0.0000 | |
| 38 | Q | H | -0.7139 | |
| 39 | A | H | -1.0389 | |
| 40 | P | H | -0.9808 | |
| 41 | G | H | -1.5053 | |
| 42 | K | H | -2.3825 | |
| 43 | G | H | -1.6177 | |
| 44 | L | H | 0.0000 | |
| 45 | E | H | -1.2231 | |
| 46 | W | H | 0.0000 | |
| 47 | V | H | 0.0000 | |
| 48 | S | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | I | H | 0.0000 | |
| 51 | S | H | -0.2778 | |
| 52 | G | H | -0.4672 | |
| 53 | S | H | -0.7135 | |
| 54 | G | H | -0.8170 | |
| 55 | G | H | -0.7433 | |
| 56 | S | H | -0.2712 | |
| 57 | T | H | 0.2830 | |
| 58 | Y | H | 0.6671 | |
| 59 | Y | H | -0.3169 | |
| 60 | A | H | -1.1567 | |
| 61 | D | H | -2.3318 | |
| 62 | S | H | -1.7123 | |
| 63 | V | H | 0.0000 | |
| 64 | K | H | -2.4210 | |
| 65 | G | H | -1.6970 | |
| 66 | R | H | -1.2516 | |
| 67 | F | H | 0.0000 | |
| 68 | T | H | -0.6642 | |
| 69 | I | H | 0.0000 | |
| 70 | S | H | -0.4646 | |
| 71 | R | H | -1.0829 | |
| 72 | D | H | -1.6529 | |
| 73 | N | H | -1.8137 | |
| 74 | S | H | -1.6409 | |
| 75 | K | H | -2.4423 | |
| 76 | N | H | -1.8730 | |
| 77 | T | H | -1.0092 | |
| 78 | L | H | 0.0000 | |
| 79 | Y | H | -0.4660 | |
| 80 | L | H | 0.0000 | |
| 81 | Q | H | -1.1229 | |
| 82 | M | H | 0.0000 | |
| 83 | N | H | -1.7213 | |
| 84 | S | H | -1.6523 | |
| 85 | L | H | 0.0000 | |
| 86 | R | H | -2.7468 | |
| 87 | A | H | -1.8985 | |
| 88 | E | H | -2.3049 | |
| 89 | D | H | 0.0000 | |
| 90 | T | H | -0.4242 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | 0.9036 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | 0.0000 | |
| 95 | C | H | 0.0000 | |
| 96 | A | H | 0.0000 | |
| 97 | R | H | -0.2023 | |
| 98 | S | H | 0.0000 | |
| 99 | T | H | 1.0594 | |
| 100 | Y | H | 2.2876 | |
| 101 | Y | H | 2.2181 | |
| 102 | Y | H | 1.7705 | |
| 103 | S | H | 0.2281 | |
| 104 | G | H | -0.4643 | |
| 105 | S | H | -0.2739 | |
| 106 | G | H | 0.1692 | |
| 107 | Y | H | 1.7943 | |
| 108 | D | H | 1.5877 | |
| 109 | Y | H | 1.6072 | |
| 110 | Y | H | 0.7342 | |
| 111 | F | H | 0.0000 | |
| 112 | S | H | -0.2184 | |
| 113 | P | H | -0.4834 | |
| 114 | W | H | -0.3677 | |
| 115 | G | H | 0.0000 | |
| 116 | P | H | -0.3505 | |
| 117 | G | H | 0.1926 | |
| 118 | T | H | 0.7510 | |
| 119 | L | H | 1.7415 | |
| 120 | V | H | 0.0000 | |
| 121 | T | H | 0.3771 | |
| 122 | V | H | 0.0000 | |
| 123 | S | H | -0.6586 | |
| 124 | S | H | -0.5988 | |
| 125 | D | L | -2.0071 | |
| 126 | I | L | 0.0000 | |
| 127 | Q | L | -2.1936 | |
| 128 | M | L | 0.0000 | |
| 129 | T | L | -1.2805 | |
| 130 | Q | L | 0.0000 | |
| 131 | S | L | -0.7313 | |
| 132 | P | L | -0.5981 | |
| 133 | S | L | -0.9592 | |
| 134 | S | L | -1.1325 | |
| 135 | L | L | -0.6517 | |
| 136 | S | L | -0.7039 | |
| 137 | A | L | 0.0000 | |
| 138 | S | L | -0.1485 | |
| 139 | V | L | 0.7188 | |
| 140 | G | L | -0.7067 | |
| 141 | D | L | -1.6686 | |
| 142 | R | L | -2.3428 | |
| 143 | V | L | 0.0000 | |
| 144 | T | L | -0.6350 | |
| 145 | I | L | 0.0000 | |
| 146 | T | L | -0.9483 | |
| 147 | C | L | 0.0000 | |
| 148 | R | L | -3.0416 | |
| 149 | A | L | 0.0000 | |
| 150 | S | L | -2.2568 | |
| 151 | Q | L | -2.8593 | |
| 152 | H | L | -2.5706 | |
| 153 | I | L | 0.0000 | |
| 154 | R | L | -2.5968 | |
| 155 | S | L | -1.4645 | |
| 156 | S | L | -0.3889 | |
| 157 | L | L | 0.0000 | |
| 158 | A | L | 0.0000 | |
| 159 | W | L | 0.0000 | |
| 160 | Y | L | 0.0000 | |
| 161 | Q | L | -1.0061 | |
| 162 | Q | L | 0.0000 | |
| 163 | K | L | -2.0262 | |
| 164 | P | L | -1.4698 | |
| 165 | G | L | -1.6564 | |
| 166 | K | L | -2.5542 | |
| 167 | A | L | -1.5274 | |
| 168 | P | L | 0.0000 | |
| 169 | K | L | -1.9921 | |
| 170 | L | L | -0.7939 | |
| 171 | L | L | 0.0000 | |
| 172 | I | L | 0.0000 | |
| 173 | Y | L | -0.1841 | |
| 174 | G | L | -0.8096 | |
| 175 | A | L | 0.0000 | |
| 176 | S | L | -0.7904 | |
| 177 | S | L | -0.8352 | |
| 178 | R | L | -1.6610 | |
| 179 | A | L | -0.8894 | |
| 180 | T | L | -0.5883 | |
| 181 | G | L | -0.9209 | |
| 182 | I | L | 0.0000 | |
| 183 | P | L | -1.3870 | |
| 184 | D | L | -2.3069 | |
| 185 | R | L | -1.6180 | |
| 186 | F | L | 0.0000 | |
| 187 | S | L | -1.0293 | |
| 188 | G | L | -0.5935 | |
| 189 | S | L | -0.8338 | |
| 190 | G | L | -1.4388 | |
| 191 | S | L | -1.8332 | |
| 192 | G | L | -2.4331 | |
| 193 | T | L | -2.6644 | |
| 194 | D | L | -3.1592 | |
| 195 | F | L | 0.0000 | |
| 196 | T | L | -0.9090 | |
| 197 | L | L | 0.0000 | |
| 198 | T | L | -0.6142 | |
| 199 | I | L | 0.0000 | |
| 200 | S | L | -1.6832 | |
| 201 | S | L | -1.2900 | |
| 202 | L | L | 0.0000 | |
| 203 | Q | L | -0.7758 | |
| 204 | P | L | -0.6465 | |
| 205 | E | L | -1.8864 | |
| 206 | D | L | 0.0000 | |
| 207 | F | L | -0.5659 | |
| 208 | A | L | 0.0000 | |
| 209 | T | L | -1.2462 | |
| 210 | Y | L | 0.0000 | |
| 211 | Y | L | 0.0000 | |
| 212 | C | L | 0.0000 | |
| 213 | Q | L | 0.0000 | |
| 214 | H | L | 0.0000 | |
| 215 | T | L | 1.2003 | |
| 216 | Y | L | 1.5394 | |
| 217 | I | L | 2.0530 | |
| 218 | T | L | 0.8456 | |
| 219 | P | L | 0.0153 | |
| 220 | Y | L | 0.0000 | |
| 221 | T | L | -0.4581 | |
| 222 | F | L | -0.4808 | |
| 223 | G | L | 0.0000 | |
| 224 | Q | L | -1.5889 | |
| 225 | G | L | 0.0000 | |
| 226 | T | L | 0.0000 | |
| 227 | K | L | -2.0579 | |
| 228 | V | L | 0.0000 | |
| 229 | E | L | -0.9095 | |
| 230 | I | L | 0.9387 | |
| 231 | K | L | -0.7860 |