Project name: A673T

Status: done

Started: 2025-07-23 09:43:57
Settings
Chain sequence(s) A: DTEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVI
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:33)
Show buried residues

Minimal score value
-2.1404
Maximal score value
2.4703
Average score
-0.0554
Total score value
-2.2711

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.8025
2 T A -0.7376
3 E A -1.4735
4 F A 1.2621
5 R A -1.6674
6 H A -1.6594
7 D A -1.7680
8 S A -0.5576
9 G A 0.0025
10 Y A 0.7179
11 E A -1.4886
12 V A 0.1580
13 H A -1.0379
14 H A -1.1549
15 Q A -1.6667
16 K A -1.3597
17 L A 1.3356
18 V A 0.9260
19 F A 2.2810
20 F A 2.3085
21 A A -0.1010
22 E A -2.1404
23 D A -1.8024
24 V A 1.3603
25 G A -0.1651
26 S A -0.4486
27 N A -1.6025
28 K A -2.0224
29 G A -0.4523
30 A A 0.3150
31 I A 2.2718
32 I A 0.8010
33 G A -0.3041
34 L A 1.1470
35 M A 1.3822
36 V A 0.8307
37 G A -0.2809
38 G A -0.2238
39 V A 1.9420
40 V A 2.4703
41 I A 2.1343
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018