Project name: 83_rank

Status: done

Started: 2026-05-18 11:38:18
Settings
Chain sequence(s) B: MTEKEKRKWEMKRKAWEVISATPASDRGRQMWWWNQYYIVDMMESEEDIEWMEKQIEEPYKKEMAEIEKLKS
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:27)
Show buried residues

Minimal score value
-3.9868
Maximal score value
0.7532
Average score
-1.5211
Total score value
-109.5166

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M B -0.1758
2 T B -1.4507
3 E B -2.8106
4 K B -3.3374
5 E B -2.8718
6 K B -2.5591
7 R B -2.9119
8 K B -2.2385
9 W B -1.3323
10 E B -1.5276
11 M B 0.0000
12 K B -0.7086
13 R B -0.9705
14 K B -1.0819
15 A B 0.0000
16 W B -0.0213
17 E B -0.5498
18 V B 0.0000
19 I B 0.0000
20 S B -0.2316
21 A B -0.3485
22 T B 0.0000
23 P B -0.9518
24 A B -1.0094
25 S B -1.2770
26 D B -2.0105
27 R B -2.5005
28 G B -1.7645
29 R B -1.9092
30 Q B -1.2147
31 M B -0.2383
32 W B -0.0987
33 W B 0.0000
34 W B 0.2210
35 N B -0.1212
36 Q B 0.0195
37 Y B 0.3871
38 Y B 0.7532
39 I B 0.4072
40 V B 0.0000
41 D B -1.0137
42 M B 0.0254
43 M B 0.0000
44 E B -2.7847
45 S B -2.8517
46 E B -3.9868
47 E B -3.5740
48 D B -2.6118
49 I B 0.0000
50 E B -3.0978
51 W B -1.3083
52 M B 0.0000
53 E B -2.4906
54 K B -2.9597
55 Q B -2.0692
56 I B 0.0000
57 E B -3.5073
58 E B -3.9176
59 P B -2.6497
60 Y B -2.5510
61 K B -3.6043
62 K B -3.5641
63 E B -2.6786
64 M B -2.1905
65 A B -2.6160
66 E B -3.3545
67 I B -2.4451
68 E B -3.2278
69 K B -2.9970
70 L B -1.1397
71 K B -2.4146
72 S B -1.5002
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018