| Chain sequence(s) |
A: EIVLTQSPATLSLSPGERVILSCRVNQSVTSYLAWYQQKPGQAPRLLIYQTTNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCYQRRNWPLSFGGGTKVEIKGGGGSGGGGSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSRYSMSWVRQAPGKGLEWVSSNSASGATTFYADPVKGRFTISRDNSKKTLYLQMNSLRAEDTAVYYCAKDQDFDILTGYLQWFDPWGQGTLVTVSS
B: AQEVQQSPHCTTVPVGASVNITCSTSGGLRGIYLRQLGPQPQDIIYYEDGVVPTTDRRFRGRIDFSGSQDNLTITMHRLQLSDTGTYTCQAITEVNVYGSGTLVLVTEEQSQGWHRCSDAPPRASALPAPPTGSALPDPQTASALPDPPAASALP input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:30)
[INFO] Main: Simulation completed successfully. (00:04:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -2.0045 | |
| 2 | I | A | 0.0000 | |
| 3 | V | A | 0.1104 | |
| 4 | L | A | 0.0000 | |
| 5 | T | A | -0.8660 | |
| 6 | Q | A | -0.7113 | |
| 7 | S | A | -0.5479 | |
| 8 | P | A | -0.1266 | |
| 9 | A | A | -0.3139 | |
| 10 | T | A | -0.4225 | |
| 11 | L | A | -0.2150 | |
| 12 | S | A | -0.8387 | |
| 13 | L | A | -1.1026 | |
| 14 | S | A | -1.6488 | |
| 15 | P | A | -1.9041 | |
| 16 | G | A | -1.7993 | |
| 17 | E | A | -2.1540 | |
| 18 | R | A | -2.2752 | |
| 19 | V | A | 0.0000 | |
| 20 | I | A | 1.0245 | |
| 21 | L | A | 0.0000 | |
| 22 | S | A | -0.5850 | |
| 23 | C | A | 0.0000 | |
| 24 | R | A | -2.6768 | |
| 25 | V | A | 0.0000 | |
| 26 | N | A | -2.1661 | |
| 27 | Q | A | -2.2588 | |
| 28 | S | A | -1.5551 | |
| 29 | V | A | 0.0000 | |
| 30 | T | A | -0.5762 | |
| 31 | S | A | -0.3104 | |
| 32 | Y | A | -0.0633 | |
| 33 | L | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | Q | A | 0.0000 | |
| 38 | Q | A | 0.0000 | |
| 39 | K | A | -1.3209 | |
| 40 | P | A | -0.8955 | |
| 41 | G | A | -1.2617 | |
| 42 | Q | A | -1.6953 | |
| 43 | A | A | -1.1648 | |
| 44 | P | A | 0.0000 | |
| 45 | R | A | -1.0481 | |
| 46 | L | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | 0.0000 | |
| 50 | Q | A | -0.3378 | |
| 51 | T | A | 0.0000 | |
| 52 | T | A | -0.7468 | |
| 53 | N | A | -0.8209 | |
| 54 | R | A | -1.3775 | |
| 55 | A | A | 0.0000 | |
| 56 | T | A | -0.5526 | |
| 57 | G | A | -0.6443 | |
| 58 | I | A | -0.5458 | |
| 59 | P | A | -0.3670 | |
| 60 | A | A | -0.3314 | |
| 61 | R | A | -0.6477 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.3337 | |
| 64 | G | A | 0.0000 | |
| 65 | S | A | -0.7168 | |
| 66 | G | A | -1.1502 | |
| 67 | S | A | -1.0428 | |
| 68 | G | A | -1.2307 | |
| 69 | T | A | -1.9934 | |
| 70 | D | A | -2.4010 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.4245 | |
| 73 | L | A | 0.0000 | |
| 74 | T | A | 0.0820 | |
| 75 | I | A | 0.0000 | |
| 76 | S | A | -1.0879 | |
| 77 | S | A | -1.7173 | |
| 78 | L | A | 0.0000 | |
| 79 | E | A | -2.1931 | |
| 80 | P | A | -1.8179 | |
| 81 | E | A | -2.4068 | |
| 82 | D | A | 0.0000 | |
| 83 | F | A | -0.6411 | |
| 84 | A | A | 0.0000 | |
| 85 | V | A | -0.2474 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | Y | A | 0.0000 | |
| 90 | Q | A | 0.0000 | |
| 91 | R | A | 0.0000 | |
| 92 | R | A | -0.5278 | |
| 93 | N | A | -1.1030 | |
| 94 | W | A | -0.7905 | |
| 95 | P | A | -0.7850 | |
| 96 | L | A | 0.0000 | |
| 97 | S | A | -0.1740 | |
| 98 | F | A | 0.1119 | |
| 99 | G | A | 0.0000 | |
| 100 | G | A | -0.7803 | |
| 101 | G | A | -0.6946 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | -0.7828 | |
| 104 | V | A | 0.0000 | |
| 105 | E | A | -1.2146 | |
| 106 | I | A | -1.6307 | |
| 107 | K | A | -2.2090 | |
| 108 | G | A | -1.7628 | |
| 109 | G | A | -1.7829 | |
| 110 | G | A | -1.3763 | |
| 111 | G | A | -1.2781 | |
| 112 | S | A | -1.0658 | |
| 113 | G | A | -1.5746 | |
| 114 | G | A | -1.4415 | |
| 115 | G | A | -1.7018 | |
| 116 | G | A | -1.4552 | |
| 117 | S | A | -1.1018 | |
| 118 | G | A | -1.2382 | |
| 119 | G | A | -1.2628 | |
| 120 | G | A | -1.4476 | |
| 121 | G | A | -1.6827 | |
| 122 | S | A | -1.7552 | |
| 123 | E | A | -2.4487 | |
| 124 | V | A | -1.5490 | |
| 125 | Q | A | -1.7305 | |
| 126 | L | A | 0.0000 | |
| 127 | V | A | 0.0819 | |
| 128 | E | A | 0.0000 | |
| 129 | S | A | -0.4293 | |
| 130 | G | A | -0.8220 | |
| 131 | G | A | 0.0917 | |
| 132 | G | A | 0.6454 | |
| 133 | L | A | 1.4205 | |
| 134 | V | A | -0.0159 | |
| 135 | Q | A | -1.3289 | |
| 136 | P | A | -1.6324 | |
| 137 | G | A | -1.4818 | |
| 138 | G | A | -1.0530 | |
| 139 | S | A | -1.4350 | |
| 140 | L | A | -1.0651 | |
| 141 | R | A | -2.3145 | |
| 142 | L | A | 0.0000 | |
| 143 | S | A | -0.5745 | |
| 144 | C | A | 0.0000 | |
| 145 | A | A | -0.6216 | |
| 146 | A | A | 0.0000 | |
| 147 | S | A | -1.3344 | |
| 148 | G | A | -1.3371 | |
| 149 | F | A | -0.8256 | |
| 150 | T | A | -0.7471 | |
| 151 | F | A | 0.0000 | |
| 152 | S | A | -1.6351 | |
| 153 | R | A | -2.0797 | |
| 154 | Y | A | -0.9874 | |
| 155 | S | A | 0.0000 | |
| 156 | M | A | 0.0000 | |
| 157 | S | A | 0.0000 | |
| 158 | W | A | 0.0000 | |
| 159 | V | A | 0.0000 | |
| 160 | R | A | 0.0000 | |
| 161 | Q | A | -0.6510 | |
| 162 | A | A | -1.0556 | |
| 163 | P | A | -0.8429 | |
| 164 | G | A | -1.4513 | |
| 165 | K | A | -2.2674 | |
| 166 | G | A | -1.3730 | |
| 167 | L | A | 0.0000 | |
| 168 | E | A | -0.9365 | |
| 169 | W | A | 0.0000 | |
| 170 | V | A | 0.0000 | |
| 171 | S | A | 0.0000 | |
| 172 | S | A | 0.0000 | |
| 173 | N | A | 0.0000 | |
| 174 | S | A | 0.0000 | |
| 175 | A | A | 0.0000 | |
| 176 | S | A | -0.7063 | |
| 177 | G | A | -0.2962 | |
| 178 | A | A | -0.0940 | |
| 179 | T | A | 0.0000 | |
| 180 | T | A | 0.0940 | |
| 181 | F | A | -0.0322 | |
| 182 | Y | A | -0.7133 | |
| 183 | A | A | 0.0000 | |
| 184 | D | A | -2.5996 | |
| 185 | P | A | -1.7793 | |
| 186 | V | A | 0.0000 | |
| 187 | K | A | -2.5409 | |
| 188 | G | A | -1.7777 | |
| 189 | R | A | -1.4666 | |
| 190 | F | A | 0.0000 | |
| 191 | T | A | -0.9723 | |
| 192 | I | A | 0.0000 | |
| 193 | S | A | -0.4096 | |
| 194 | R | A | -1.0280 | |
| 195 | D | A | -1.6332 | |
| 196 | N | A | -2.0332 | |
| 197 | S | A | -1.7511 | |
| 198 | K | A | -2.6897 | |
| 199 | K | A | -2.4310 | |
| 200 | T | A | -1.3986 | |
| 201 | L | A | 0.0000 | |
| 202 | Y | A | -0.6387 | |
| 203 | L | A | 0.0000 | |
| 204 | Q | A | -1.6393 | |
| 205 | M | A | 0.0000 | |
| 206 | N | A | -1.9347 | |
| 207 | S | A | -1.4122 | |
| 208 | L | A | 0.0000 | |
| 209 | R | A | -2.3129 | |
| 210 | A | A | -1.7039 | |
| 211 | E | A | -2.2305 | |
| 212 | D | A | 0.0000 | |
| 213 | T | A | -0.3871 | |
| 214 | A | A | 0.0000 | |
| 215 | V | A | 0.6915 | |
| 216 | Y | A | 0.0000 | |
| 217 | Y | A | 0.0000 | |
| 218 | C | A | 0.0000 | |
| 219 | A | A | 0.0000 | |
| 220 | K | A | 0.0000 | |
| 221 | D | A | 0.0000 | |
| 222 | Q | A | -0.8799 | |
| 223 | D | A | -1.7281 | |
| 224 | F | A | -1.0344 | |
| 225 | D | A | -1.6761 | |
| 226 | I | A | 0.0786 | |
| 227 | L | A | 0.0000 | |
| 228 | T | A | -1.0057 | |
| 229 | G | A | 0.0000 | |
| 230 | Y | A | 0.0000 | |
| 231 | L | A | 0.0000 | |
| 232 | Q | A | 0.0000 | |
| 233 | W | A | 0.0000 | |
| 234 | F | A | 0.0000 | |
| 235 | D | A | -0.6334 | |
| 236 | P | A | -0.7126 | |
| 237 | W | A | 0.0000 | |
| 238 | G | A | 0.0000 | |
| 239 | Q | A | -1.3856 | |
| 240 | G | A | 0.0000 | |
| 241 | T | A | 0.4237 | |
| 242 | L | A | 1.5530 | |
| 243 | V | A | 0.0000 | |
| 244 | T | A | 0.3128 | |
| 245 | V | A | 0.0000 | |
| 246 | S | A | -0.6721 | |
| 247 | S | A | -0.6581 | |
| 1 | A | B | -0.4457 | |
| 2 | Q | B | -1.5527 | |
| 3 | E | B | -2.2288 | |
| 4 | V | B | 0.0000 | |
| 5 | Q | B | -1.9428 | |
| 6 | Q | B | 0.0000 | |
| 7 | S | B | -0.9057 | |
| 8 | P | B | -1.0504 | |
| 9 | H | B | -1.3468 | |
| 10 | C | B | -0.8137 | |
| 11 | T | B | 0.0000 | |
| 12 | T | B | -0.0410 | |
| 13 | V | B | 0.0000 | |
| 14 | P | B | -1.0913 | |
| 15 | V | B | -0.5387 | |
| 16 | G | B | -0.8450 | |
| 17 | A | B | -0.5927 | |
| 18 | S | B | -1.0020 | |
| 19 | V | B | 0.0000 | |
| 20 | N | B | -1.3966 | |
| 21 | I | B | 0.0000 | |
| 22 | T | B | -1.0648 | |
| 23 | C | B | 0.0000 | |
| 24 | S | B | -1.7471 | |
| 25 | T | B | -1.8703 | |
| 26 | S | B | -1.7161 | |
| 27 | G | B | -1.3421 | |
| 28 | G | B | -1.5226 | |
| 29 | L | B | 0.0000 | |
| 30 | R | B | -2.4343 | |
| 31 | G | B | 0.0000 | |
| 32 | I | B | 0.0000 | |
| 33 | Y | B | 0.1460 | |
| 34 | L | B | 0.0000 | |
| 35 | R | B | -0.4948 | |
| 36 | Q | B | -0.5453 | |
| 37 | L | B | 0.2571 | |
| 38 | G | B | -0.7307 | |
| 39 | P | B | -0.9605 | |
| 40 | Q | B | -1.4767 | |
| 41 | P | B | -1.1010 | |
| 42 | Q | B | -1.5231 | |
| 43 | D | B | -1.4458 | |
| 44 | I | B | 0.0000 | |
| 45 | I | B | 0.0000 | |
| 46 | Y | B | 0.0444 | |
| 47 | Y | B | -0.4618 | |
| 48 | E | B | -1.4707 | |
| 49 | D | B | -1.9516 | |
| 50 | G | B | -1.3009 | |
| 51 | V | B | 0.0000 | |
| 52 | V | B | 0.0000 | |
| 53 | P | B | 0.0000 | |
| 54 | T | B | -0.3757 | |
| 55 | T | B | 0.0000 | |
| 56 | D | B | 0.0000 | |
| 57 | R | B | -2.9196 | |
| 58 | R | B | -2.1947 | |
| 59 | F | B | 0.0000 | |
| 60 | R | B | -1.9320 | |
| 61 | G | B | -1.8182 | |
| 62 | R | B | -1.6560 | |
| 63 | I | B | 0.0000 | |
| 64 | D | B | 0.0000 | |
| 65 | F | B | 0.0000 | |
| 66 | S | B | -0.8048 | |
| 67 | G | B | -1.2913 | |
| 68 | S | B | -1.4910 | |
| 69 | Q | B | -1.7861 | |
| 70 | D | B | -2.2240 | |
| 71 | N | B | -2.1240 | |
| 72 | L | B | 0.0000 | |
| 73 | T | B | -0.9910 | |
| 74 | I | B | 0.0000 | |
| 75 | T | B | -0.6787 | |
| 76 | M | B | 0.0000 | |
| 77 | H | B | -1.4561 | |
| 78 | R | B | -2.0600 | |
| 79 | L | B | 0.0000 | |
| 80 | Q | B | -0.7940 | |
| 81 | L | B | 0.4261 | |
| 82 | S | B | 0.0124 | |
| 83 | D | B | 0.0000 | |
| 84 | T | B | 0.2648 | |
| 85 | G | B | 0.2871 | |
| 86 | T | B | 0.1995 | |
| 87 | Y | B | 0.0000 | |
| 88 | T | B | 0.0000 | |
| 89 | C | B | 0.0000 | |
| 90 | Q | B | 0.0000 | |
| 91 | A | B | 0.0000 | |
| 92 | I | B | -0.4913 | |
| 93 | T | B | -1.1516 | |
| 94 | E | B | -1.4701 | |
| 95 | V | B | 0.5541 | |
| 96 | N | B | -0.2389 | |
| 97 | V | B | 0.0949 | |
| 98 | Y | B | 0.5559 | |
| 99 | G | B | -0.3814 | |
| 100 | S | B | -0.4111 | |
| 101 | G | B | 0.0000 | |
| 102 | T | B | 0.0000 | |
| 103 | L | B | 0.4058 | |
| 104 | V | B | 0.0000 | |
| 105 | L | B | 0.8067 | |
| 106 | V | B | 0.0000 | |
| 107 | T | B | -1.2026 | |
| 108 | E | B | -2.6952 | |
| 109 | E | B | -3.4046 | |
| 110 | Q | B | -2.7948 | |
| 111 | S | B | -2.3549 | |
| 112 | Q | B | -1.9618 | |
| 113 | G | B | -1.3165 | |
| 114 | W | B | -0.7284 | |
| 115 | H | B | -1.7200 | |
| 116 | R | B | -2.3796 | |
| 117 | C | B | -1.5235 | |
| 118 | S | B | -1.8959 | |
| 119 | D | B | -2.4664 | |
| 120 | A | B | -1.5501 | |
| 121 | P | B | -1.5990 | |
| 122 | P | B | -1.5868 | |
| 123 | R | B | -2.0691 | |
| 124 | A | B | -0.7920 | |
| 125 | S | B | -0.3750 | |
| 126 | A | B | 0.3569 | |
| 127 | L | B | 1.3688 | |
| 128 | P | B | 0.3942 | |
| 129 | A | B | 0.1669 | |
| 130 | P | B | -0.2495 | |
| 131 | P | B | -0.6160 | |
| 132 | T | B | -0.5311 | |
| 133 | G | B | -0.4555 | |
| 134 | S | B | -0.0703 | |
| 135 | A | B | 0.2236 | |
| 136 | L | B | 0.8212 | |
| 137 | P | B | -0.6518 | |
| 138 | D | B | -1.9825 | |
| 139 | P | B | -1.5299 | |
| 140 | Q | B | -1.9110 | |
| 141 | T | B | -0.9926 | |
| 142 | A | B | -0.2142 | |
| 143 | S | B | 0.0431 | |
| 144 | A | B | 0.3803 | |
| 145 | L | B | 0.9278 | |
| 146 | P | B | -0.4965 | |
| 147 | D | B | -1.7072 | |
| 148 | P | B | -1.0533 | |
| 149 | P | B | -0.8631 | |
| 150 | A | B | -0.4133 | |
| 151 | A | B | 0.1074 | |
| 152 | S | B | 0.2095 | |
| 153 | A | B | 0.6620 | |
| 154 | L | B | 1.4045 | |
| 155 | P | B | 0.4768 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine