Project name: query_structure

Status: done

Started: 2026-03-17 00:30:24
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Chain sequence(s) A: QVQLQESGGGLVQPGGSLRLSCAASNSHFSINTMGWYRQAPGKQRELVAAITSGGSTNYTDSVKGRFTISRDNAKNTVYLQMNSLEPEDTAVYYCNADGWDPLYNSYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-3.1538
Maximal score value
1.6034
Average score
-0.899
Total score value
-106.0852

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5108
2 V A -1.4280
3 Q A -1.9003
4 L A 0.0000
5 Q A -1.6721
6 E A 0.0000
7 S A -1.0893
8 G A -1.0250
9 G A -0.7864
10 G A -0.0354
11 L A 1.0380
12 V A 0.0202
13 Q A -1.2862
14 P A -1.5370
15 G A -1.3668
16 G A -0.8862
17 S A -1.1219
18 L A -1.0114
19 R A -2.2566
20 L A 0.0000
21 S A -0.8723
22 C A 0.0000
23 A A -1.1827
24 A A 0.0000
25 S A -1.5966
26 N A -1.6883
27 S A -1.4982
28 H A -1.2518
29 F A -0.6847
30 S A -0.7697
31 I A 0.0000
32 N A -0.9612
33 T A -0.7291
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A -0.5603
38 R A -1.4333
39 Q A -2.0827
40 A A -1.9665
41 P A -1.2967
42 G A -1.8011
43 K A -3.1538
44 Q A -3.0812
45 R A -2.6045
46 E A -2.5949
47 L A -0.8283
48 V A 0.0000
49 A A 0.0000
50 A A -0.4294
51 I A 0.0000
52 T A -1.1744
53 S A -1.2678
54 G A -1.1407
55 G A -1.2057
56 S A -0.9355
57 T A -0.9649
58 N A -1.6670
59 Y A -1.4288
60 T A -1.7866
61 D A -2.6258
62 S A -1.8405
63 V A 0.0000
64 K A -2.7876
65 G A -1.7583
66 R A -1.4847
67 F A 0.0000
68 T A -1.0958
69 I A 0.0000
70 S A -0.6359
71 R A -1.2169
72 D A -1.7250
73 N A -2.3866
74 A A -1.6294
75 K A -2.4449
76 N A -1.9032
77 T A -1.2992
78 V A 0.0000
79 Y A -0.6248
80 L A 0.0000
81 Q A -1.5516
82 M A 0.0000
83 N A -1.4087
84 S A -1.2088
85 L A 0.0000
86 E A -2.3371
87 P A -1.8949
88 E A -2.3448
89 D A 0.0000
90 T A -0.9249
91 A A 0.0000
92 V A -0.4047
93 Y A 0.0000
94 Y A -0.5604
95 C A 0.0000
96 N A 0.0000
97 A A 0.0000
98 D A -0.8622
99 G A -0.1214
100 W A 0.7952
101 D A 0.3213
102 P A 0.5012
103 L A 1.6034
104 Y A 1.0163
105 N A -0.6118
106 S A -0.3592
107 Y A -0.3783
108 W A -0.2408
109 G A -0.8366
110 Q A -1.4076
111 G A -0.9637
112 T A -1.0691
113 Q A -0.9992
114 V A 0.0000
115 T A -0.2492
116 V A 0.0000
117 S A -0.7151
118 S A -0.9200
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Laboratory of Theory of Biopolymers 2018