Project name: LAAS

Status: done

Started: 2025-06-25 14:05:08
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Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGYTNRLKCMGWFRQAPGKERELAASISTGTGNTYYADSVKGRFTISRDNSKNTLYLQMNSLKAEDTAVYYCAADVRPDGTTCHYNSRGQGTLVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:54)
Show buried residues

Minimal score value
-3.1842
Maximal score value
1.8035
Average score
-0.802
Total score value
-97.8499

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8792
2 V H -1.5333
3 Q H -1.5403
4 L H 0.0000
5 L H 0.7199
6 E H 0.0000
7 S H -0.0518
8 G H -0.5004
9 G H 0.2921
11 G H 0.7533
12 L H 1.4383
13 V H -0.0187
14 Q H -1.3709
15 P H -1.7061
16 G H -1.4458
17 G H -0.9804
18 S H -1.0348
19 L H -0.3929
20 R H -1.1751
21 L H 0.0000
22 S H -0.2338
23 C H 0.0000
24 A H -0.3426
25 A H -0.4090
26 S H -0.7062
27 G H -1.0793
28 Y H -0.9301
29 T H -1.1413
30 N H -1.9506
35 R H -1.8527
36 L H -1.0847
37 K H -1.8182
38 C H -0.8176
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H -0.1746
43 R H 0.0000
44 Q H -1.2550
45 A H -1.4893
46 P H -1.2998
47 G H -1.8133
48 K H -3.1535
49 E H -3.1842
50 R H -1.9075
51 E H -1.3678
52 L H 0.1819
53 A H 0.0000
54 A H 0.0000
55 S H 0.4534
56 I H 0.0000
57 S H -0.8483
58 T H -1.3935
59 G H -1.0681
62 T H -1.0021
63 G H -1.2192
64 N H -1.1030
65 T H 0.0162
66 Y H 0.7880
67 Y H -0.1459
68 A H -0.9894
69 D H -2.3237
70 S H -1.7749
71 V H 0.0000
72 K H -2.4127
74 G H -1.7535
75 R H -1.6777
76 F H 0.0000
77 T H -0.5504
78 I H 0.0000
79 S H -0.7718
80 R H -1.7254
81 D H -2.2002
82 N H -2.6600
83 S H -2.1393
84 K H -2.9040
85 N H -2.5880
86 T H 0.0000
87 L H 0.0000
88 Y H -0.4096
89 L H 0.0000
90 Q H -0.7757
91 M H 0.0000
92 N H -1.2443
93 S H -1.2961
94 L H 0.0000
95 K H -2.5755
96 A H -1.8479
97 E H -2.3418
98 D H 0.0000
99 T H -0.3807
100 A H 0.0000
101 V H 0.9213
102 Y H 0.0000
103 Y H -0.0481
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 D H 0.0000
108 V H -0.6619
109 R H -1.4594
110 P H -1.4829
111 D H -2.2088
111A G H -1.4961
112A T H -1.1373
112 T H -0.6687
113 C H -0.6189
114 H H -1.2840
115 Y H 0.0000
116 N H -1.7247
117 S H -1.7917
118 R H -2.2834
119 G H -1.2522
120 Q H -1.3384
121 G H 0.0000
122 T H 0.6770
123 L H 1.8035
124 V H 0.0000
125 T H 0.3875
126 V H 0.0000
127 S H -0.6207
128 S H -0.4416
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Laboratory of Theory of Biopolymers 2018