| Chain sequence(s) |
A: GSKGHFF
C: GSKGHFF B: GSKGHFF D: GSKGHFF input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:07)
[INFO] Main: Simulation completed successfully. (00:02:08)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.8044 | |
| 2 | S | A | -1.7550 | |
| 3 | K | A | -1.7742 | |
| 4 | G | A | 0.2814 | |
| 5 | H | A | 1.4411 | |
| 6 | F | A | 3.3761 | |
| 7 | F | A | 3.5450 | |
| 1 | G | B | -1.6347 | |
| 2 | S | B | -1.7620 | |
| 3 | K | B | -2.1765 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 0.9173 | |
| 6 | F | B | 2.9712 | |
| 7 | F | B | 4.3985 | |
| 1 | G | C | -1.5940 | |
| 2 | S | C | -1.8277 | |
| 3 | K | C | -2.2438 | |
| 4 | G | C | -0.6446 | |
| 5 | H | C | 1.2687 | |
| 6 | F | C | 3.4642 | |
| 7 | F | C | 3.9791 | |
| 1 | G | D | -1.3161 | |
| 2 | S | D | -2.0042 | |
| 3 | K | D | -2.1876 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 1.8641 | |
| 6 | F | D | 2.9952 | |
| 7 | F | D | 3.8102 |