Project name: GSKGHFF4

Status: done

Started: 2026-02-20 08:55:57
Settings
Chain sequence(s) A: GSKGHFF
C: GSKGHFF
B: GSKGHFF
D: GSKGHFF
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:08)
Show buried residues

Minimal score value
-2.2438
Maximal score value
4.3985
Average score
0.4138
Total score value
11.5873

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.8044
2 S A -1.7550
3 K A -1.7742
4 G A 0.2814
5 H A 1.4411
6 F A 3.3761
7 F A 3.5450
1 G B -1.6347
2 S B -1.7620
3 K B -2.1765
4 G B 0.0000
5 H B 0.9173
6 F B 2.9712
7 F B 4.3985
1 G C -1.5940
2 S C -1.8277
3 K C -2.2438
4 G C -0.6446
5 H C 1.2687
6 F C 3.4642
7 F C 3.9791
1 G D -1.3161
2 S D -2.0042
3 K D -2.1876
4 G D 0.0000
5 H D 1.8641
6 F D 2.9952
7 F D 3.8102
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Laboratory of Theory of Biopolymers 2018