| Chain sequence(s) |
L: CSAGGPFGAANGGVWC
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:03)
[INFO] Main: Simulation completed successfully. (00:00:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 253 | C | L | 0.7990 | |
| 254 | S | L | -0.0705 | |
| 255 | A | L | -0.0655 | |
| 256 | G | L | -0.5393 | |
| 257 | G | L | -0.5964 | |
| 258 | P | L | 0.1689 | |
| 259 | F | L | 1.8095 | |
| 260 | G | L | 0.0017 | |
| 261 | A | L | -0.0351 | |
| 262 | A | L | -0.1667 | |
| 263 | N | L | -1.3496 | |
| 264 | G | L | -0.7723 | |
| 265 | G | L | 0.3748 | |
| 266 | V | L | 1.9490 | |
| 267 | W | L | 1.6092 | |
| 268 | C | L | 1.0542 |