Project name: LVAS

Status: done

Started: 2025-06-25 14:05:25
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGYTNRLKCMGWFRQAPGKERELVASISTGTGNTYYADSVKGRFTISRDNSKNTLYLQMNSLKAEDTAVYYCAADVRPDGTTCHYNSRGQGTLVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:49)
Show buried residues

Minimal score value
-3.1589
Maximal score value
1.8277
Average score
-0.842
Total score value
-102.7258

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.0241
2 V H -1.5696
3 Q H -1.5653
4 L H 0.0000
5 L H 0.7127
6 E H 0.0000
7 S H -0.1503
8 G H -0.6924
9 G H 0.1869
11 G H 0.7148
12 L H 1.4572
13 V H -0.0065
14 Q H -1.3747
15 P H -1.7098
16 G H -1.4946
17 G H -0.9940
18 S H -1.1972
19 L H -0.7363
20 R H -1.8768
21 L H 0.0000
22 S H -0.3810
23 C H 0.0000
24 A H -0.3208
25 A H -0.4891
26 S H -0.7690
27 G H -1.1050
28 Y H -0.9824
29 T H -1.1789
30 N H -1.9425
35 R H -2.0534
36 L H -1.1370
37 K H -1.8726
38 C H -0.9021
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H -0.1873
43 R H 0.0000
44 Q H -1.2135
45 A H -1.4167
46 P H -1.2839
47 G H -1.8878
48 K H -3.1396
49 E H -3.1589
50 R H -1.9225
51 E H -1.2496
52 L H 0.0978
53 V H 0.0000
54 A H 0.0000
55 S H 0.3383
56 I H 0.0000
57 S H -0.9443
58 T H -1.3657
59 G H -1.0519
62 T H -1.0112
63 G H -1.1834
64 N H -1.2696
65 T H -0.0713
66 Y H 0.7350
67 Y H -0.1588
68 A H -1.0165
69 D H -2.3724
70 S H -1.9907
71 V H 0.0000
72 K H -2.4371
74 G H -1.7677
75 R H -1.7636
76 F H 0.0000
77 T H -0.6496
78 I H 0.0000
79 S H -0.7033
80 R H -1.4848
81 D H -2.1243
82 N H -2.6688
83 S H -2.1516
84 K H -2.9617
85 N H -2.7290
86 T H 0.0000
87 L H 0.0000
88 Y H -0.5393
89 L H 0.0000
90 Q H -1.1548
91 M H 0.0000
92 N H -1.3907
93 S H -1.3390
94 L H 0.0000
95 K H -2.5879
96 A H -1.8292
97 E H -2.3486
98 D H 0.0000
99 T H -0.3655
100 A H 0.0000
101 V H 0.9613
102 Y H 0.0000
103 Y H -0.0465
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 D H 0.0000
108 V H -0.8287
109 R H -1.4789
110 P H -1.5427
111 D H -2.1955
111A G H -1.5040
112A T H -1.1567
112 T H -0.7480
113 C H -1.0621
114 H H -1.3364
115 Y H 0.0000
116 N H -1.7816
117 S H -1.8171
118 R H -2.2936
119 G H -1.2531
120 Q H -1.3334
121 G H 0.0000
122 T H 0.6892
123 L H 1.8277
124 V H 0.0000
125 T H 0.4126
126 V H 0.0000
127 S H -0.6204
128 S H -0.4431
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Laboratory of Theory of Biopolymers 2018