Project name: query_structure

Status: done

Started: 2026-03-17 00:23:56
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Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAYSHTYTIFPWTLFYWGQGTQVTVSSLE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-3.4048
Maximal score value
2.8459
Average score
-0.5219
Total score value
-64.7188

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2908
2 V A -0.5378
3 Q A -1.6744
4 L A 0.0000
5 Q A -1.7117
6 E A 0.0000
7 S A -1.0782
8 G A -1.0299
9 G A -0.8323
10 G A -0.0699
11 L A 1.0720
12 V A 0.2463
13 Q A -0.9052
14 A A -1.1539
15 G A -1.0871
16 G A -0.8555
17 S A -1.2072
18 L A -0.9154
19 R A -2.1309
20 L A 0.0000
21 S A -0.8523
22 C A 0.0000
23 A A -1.1514
24 A A -0.7019
25 S A -0.7308
26 G A 0.0124
27 Y A 0.4016
28 I A 0.0000
29 S A -1.3091
30 D A -1.7733
31 A A 0.0000
32 Y A -0.3717
33 Y A 0.3794
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A -0.0971
38 R A 0.0000
39 Q A -2.0281
40 A A -1.9404
41 P A -1.3510
42 G A -1.8063
43 K A -2.9590
44 E A -3.4048
45 R A -2.7801
46 E A -1.3144
47 F A 0.1990
48 V A 0.0000
49 A A 0.0000
50 T A 0.0000
51 I A 0.0000
52 T A 0.0000
53 H A -1.5496
54 G A -1.1122
55 T A -0.9910
56 N A -1.2419
57 T A -0.0264
58 Y A 0.8376
59 Y A 0.0229
60 A A -0.8084
61 D A -2.1994
62 S A -1.7189
63 V A 0.0000
64 K A -2.4250
65 G A -1.7729
66 R A -1.4913
67 F A 0.0000
68 T A -0.6919
69 I A 0.0000
70 S A -0.6569
71 R A -1.2757
72 D A -1.9355
73 N A -2.3389
74 A A -1.5235
75 K A -2.2850
76 N A -1.5559
77 T A -1.4350
78 V A 0.0000
79 Y A -0.6428
80 L A 0.0000
81 Q A -1.2219
82 M A 0.0000
83 N A -1.4314
84 S A -1.2150
85 L A 0.0000
86 K A -2.1575
87 P A -1.6622
88 E A -2.3290
89 D A 0.0000
90 T A -0.9234
91 A A 0.0000
92 V A -0.6906
93 Y A 0.0000
94 Y A -0.4517
95 C A 0.0000
96 A A 0.0000
97 A A 0.0000
98 Y A 1.2178
99 S A 0.4725
100 H A -0.1139
101 T A 0.7731
102 Y A 1.6318
103 T A 1.7059
104 I A 2.7684
105 F A 2.1674
106 P A 1.2903
107 W A 1.9436
108 T A 1.3917
109 L A 2.0199
110 F A 2.8459
111 Y A 1.3153
112 W A 0.6154
113 G A -0.6614
114 Q A -1.5635
115 G A -1.0086
116 T A 0.0000
117 Q A -1.1904
118 V A 0.0000
119 T A -0.2683
120 V A 0.0000
121 S A -0.5429
122 S A -0.7377
123 L A 0.1143
124 E A -1.2639
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Laboratory of Theory of Biopolymers 2018