| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAYSHTYTIFPWTLFYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:38)
[INFO] Main: Simulation completed successfully. (00:01:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2908 | |
| 2 | V | A | -0.5378 | |
| 3 | Q | A | -1.6744 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7117 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0782 | |
| 8 | G | A | -1.0299 | |
| 9 | G | A | -0.8323 | |
| 10 | G | A | -0.0699 | |
| 11 | L | A | 1.0720 | |
| 12 | V | A | 0.2463 | |
| 13 | Q | A | -0.9052 | |
| 14 | A | A | -1.1539 | |
| 15 | G | A | -1.0871 | |
| 16 | G | A | -0.8555 | |
| 17 | S | A | -1.2072 | |
| 18 | L | A | -0.9154 | |
| 19 | R | A | -2.1309 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8523 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1514 | |
| 24 | A | A | -0.7019 | |
| 25 | S | A | -0.7308 | |
| 26 | G | A | 0.0124 | |
| 27 | Y | A | 0.4016 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.3091 | |
| 30 | D | A | -1.7733 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | -0.3717 | |
| 33 | Y | A | 0.3794 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.0971 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.0281 | |
| 40 | A | A | -1.9404 | |
| 41 | P | A | -1.3510 | |
| 42 | G | A | -1.8063 | |
| 43 | K | A | -2.9590 | |
| 44 | E | A | -3.4048 | |
| 45 | R | A | -2.7801 | |
| 46 | E | A | -1.3144 | |
| 47 | F | A | 0.1990 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.5496 | |
| 54 | G | A | -1.1122 | |
| 55 | T | A | -0.9910 | |
| 56 | N | A | -1.2419 | |
| 57 | T | A | -0.0264 | |
| 58 | Y | A | 0.8376 | |
| 59 | Y | A | 0.0229 | |
| 60 | A | A | -0.8084 | |
| 61 | D | A | -2.1994 | |
| 62 | S | A | -1.7189 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4250 | |
| 65 | G | A | -1.7729 | |
| 66 | R | A | -1.4913 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.6919 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6569 | |
| 71 | R | A | -1.2757 | |
| 72 | D | A | -1.9355 | |
| 73 | N | A | -2.3389 | |
| 74 | A | A | -1.5235 | |
| 75 | K | A | -2.2850 | |
| 76 | N | A | -1.5559 | |
| 77 | T | A | -1.4350 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6428 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2219 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4314 | |
| 84 | S | A | -1.2150 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.1575 | |
| 87 | P | A | -1.6622 | |
| 88 | E | A | -2.3290 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.9234 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.6906 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.4517 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | Y | A | 1.2178 | |
| 99 | S | A | 0.4725 | |
| 100 | H | A | -0.1139 | |
| 101 | T | A | 0.7731 | |
| 102 | Y | A | 1.6318 | |
| 103 | T | A | 1.7059 | |
| 104 | I | A | 2.7684 | |
| 105 | F | A | 2.1674 | |
| 106 | P | A | 1.2903 | |
| 107 | W | A | 1.9436 | |
| 108 | T | A | 1.3917 | |
| 109 | L | A | 2.0199 | |
| 110 | F | A | 2.8459 | |
| 111 | Y | A | 1.3153 | |
| 112 | W | A | 0.6154 | |
| 113 | G | A | -0.6614 | |
| 114 | Q | A | -1.5635 | |
| 115 | G | A | -1.0086 | |
| 116 | T | A | 0.0000 | |
| 117 | Q | A | -1.1904 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.2683 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.5429 | |
| 122 | S | A | -0.7377 | |
| 123 | L | A | 0.1143 | |
| 124 | E | A | -1.2639 |