Project name: 297

Status: done

Started: 2025-06-25 13:28:14
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Chain sequence(s) H: EVQLVESGGGLVQAGDSLRLSCAASGRSFSNDAMGWFRQAPGKERSFVAAINWSGELTGYAGSVKGRFTISRDGVENMVFLQMNSLVPEDTGVYYCAAVEGRDYYRGAQYYDYWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:51)
Show buried residues

Minimal score value
-3.2808
Maximal score value
1.0525
Average score
-0.7729
Total score value
-95.8373

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.3879
2 V H -1.9182
3 Q H -1.6776
4 L H 0.0000
5 V H 0.2362
6 E H -0.2422
7 S H -0.7250
8 G H -1.0569
9 G H -0.6311
11 G H 0.2113
12 L H 1.0525
13 V H 0.0353
14 Q H -1.2069
15 A H -1.1426
16 G H -1.2539
17 D H -1.4171
18 S H -1.3660
19 L H -0.9745
20 R H -1.8627
21 L H 0.0000
22 S H -0.5023
23 C H 0.0000
24 A H -0.4336
25 A H 0.0000
26 S H -1.2265
27 G H -2.0995
28 R H -2.6808
29 S H -1.2457
30 F H 0.0000
35 S H -0.7864
36 N H -1.3511
37 D H 0.0000
38 A H 0.0000
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H 0.0000
43 R H -1.0100
44 Q H -1.9132
45 A H -1.8484
46 P H -1.3969
47 G H -1.9294
48 K H -3.2120
49 E H -3.2808
50 R H -2.1901
51 S H -1.2906
52 F H -0.3000
53 V H 0.0000
54 A H 0.0000
55 A H 0.0000
56 I H 0.0000
57 N H 0.0000
58 W H -1.2678
59 S H -0.9893
62 G H -1.0361
63 E H -1.6086
64 L H -0.5123
65 T H -0.1876
66 G H -0.1854
67 Y H -0.4049
68 A H -0.5177
69 G H -0.9896
70 S H -1.1515
71 V H 0.0000
72 K H -2.1496
74 G H -1.5889
75 R H -1.3687
76 F H 0.0000
77 T H -0.8417
78 I H 0.0000
79 S H -0.6539
80 R H -0.8183
81 D H -1.2839
82 G H -0.7155
83 V H 0.2975
84 E H -1.5061
85 N H -1.3561
86 M H -0.6519
87 V H 0.0000
88 F H -0.5802
89 L H 0.0000
90 Q H -1.1458
91 M H 0.0000
92 N H -1.2765
93 S H -1.0153
94 L H 0.0000
95 V H -0.5557
96 P H -0.9219
97 E H -1.6764
98 D H 0.0000
99 T H -0.4960
100 G H 0.0000
101 V H -0.3762
102 Y H 0.0000
103 Y H -0.2150
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 V H 0.0000
108 E H -2.4530
109 G H -2.0252
110 R H -2.6532
111 D H -2.1051
111A Y H 0.0078
111B Y H -0.6944
112B R H -0.7687
112A G H -0.6688
112 A H -0.5256
113 Q H -0.9474
114 Y H -0.1680
115 Y H -0.6085
116 D H -1.5734
117 Y H -0.9563
118 W H -0.2981
119 G H -0.4004
120 Q H -1.1644
121 G H -0.6216
122 T H -0.6617
123 Q H -0.7259
124 V H 0.0000
125 T H 0.0405
126 V H 0.0000
127 S H -0.5505
128 S H -0.5439
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Laboratory of Theory of Biopolymers 2018