Project name: X2Y2_stablized_scTCR

Status: done

Started: 2026-05-11 05:43:12
Settings
Chain sequence(s) A: QKEVEQSPGPLSVPEGASVSLNCTYSDRGSQSFFWYRQYPGKGPELLMSLWNSGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVANERNYQLIWGAGTKLTINPGGGSEGGGSEGGGSEGGGSEGGTGDAGVEQSPRHLSVPEGAQVTLSCSPISGHRSVSWYQQDPGQGPQFLFEFYHGSLRNKGNFPDRFSGRQFSNSRSEMNVSTLEPGDSALYLCASSLAGDTQYFGPGTRLTVT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:02)
Show buried residues

Minimal score value
-3.8648
Maximal score value
1.155
Average score
-1.0059
Total score value
-247.4519

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.5636
2 K A -3.4174
3 E A -3.4429
4 V A 0.0000
5 E A -2.3772
6 Q A 0.0000
7 S A -1.0298
8 P A -1.0170
9 G A -1.0348
10 P A -1.1171
11 L A -0.4634
12 S A -0.6083
13 V A -0.6011
14 P A -1.5513
15 E A -2.3719
16 G A -2.3775
17 A A -1.6790
18 S A -1.6447
19 V A 0.0000
20 S A -0.5420
21 L A 0.0000
22 N A -0.9886
23 C A 0.0000
24 T A -1.1731
25 Y A 0.0000
26 S A -2.3081
27 D A -2.3416
28 R A -2.5305
29 G A -2.1145
30 S A 0.0000
31 Q A -1.1327
32 S A 0.0000
33 F A 0.0000
34 F A 0.0000
35 W A 0.0000
36 Y A 0.0000
37 R A -0.5854
38 Q A 0.0000
39 Y A -0.6779
40 P A -0.6746
41 G A -1.4012
42 K A -1.6829
43 G A 0.0000
44 P A 0.0000
45 E A -0.4642
46 L A 0.2863
47 L A -0.1048
48 M A 0.0000
49 S A -0.0243
50 L A 0.0000
51 W A 0.2684
52 N A -0.7627
53 S A -1.2303
54 G A -1.7997
55 D A -3.1034
56 K A -3.2907
57 E A -3.8648
58 D A -3.2384
59 G A -2.2573
60 R A -2.5603
61 F A 0.0000
62 T A 0.0000
63 A A 0.0000
64 Q A -2.1522
65 L A -1.2637
66 N A -1.2047
67 K A -1.3815
68 A A -0.6257
69 S A -0.6053
70 Q A -0.8040
71 Y A -0.4508
72 V A 0.0000
73 S A 0.0000
74 L A 0.0000
75 L A -0.7664
76 I A 0.0000
77 R A -2.9822
78 D A -3.2503
79 S A 0.0000
80 Q A -1.9571
81 P A -1.0675
82 S A -0.5271
83 D A 0.0000
84 S A -0.7106
85 A A 0.0000
86 T A -0.9242
87 Y A 0.0000
88 L A 0.0000
89 C A 0.0000
90 A A 0.0000
91 V A 0.0000
92 A A 0.0000
93 N A -2.4691
94 E A -3.2565
95 R A -3.3994
96 N A -2.9740
97 Y A -1.5709
98 Q A -1.3338
99 L A 0.0000
100 I A -0.6200
101 W A -0.9598
102 G A 0.0000
103 A A -1.4264
104 G A -1.2872
105 T A 0.0000
106 K A -1.9599
107 L A 0.0000
108 T A -0.9333
109 I A 0.0000
110 N A -1.6615
111 P A -1.5891
112 G A -1.6141
113 G A -1.5729
114 G A -1.4703
115 S A -1.7023
116 E A -2.5263
117 G A -1.8005
118 G A -1.5269
119 G A -1.5096
120 S A -1.5505
121 E A -2.3572
122 G A -1.7218
123 G A -1.4016
124 G A -1.3792
125 S A -1.6162
126 E A -2.4256
127 G A -1.8161
128 G A -1.6653
129 G A -1.6365
130 S A -1.7137
131 E A -2.4463
132 G A -1.7775
133 G A -1.5908
134 T A -1.3095
135 G A -1.5941
136 D A -2.1392
137 A A -1.4027
138 G A -1.1817
139 V A 0.0000
140 E A -2.1253
141 Q A 0.0000
142 S A -1.2972
143 P A -1.3690
144 R A -2.3107
145 H A -2.0750
146 L A -0.9106
147 S A -0.6339
148 V A -0.4620
149 P A -1.4525
150 E A -2.6890
151 G A -1.9057
152 A A -1.5298
153 Q A -1.6939
154 V A 0.0000
155 T A -0.5348
156 L A 0.0000
157 S A -1.0033
158 C A 0.0000
159 S A -1.3559
160 P A -0.8648
161 I A -0.4185
162 S A -0.5505
163 G A -0.6232
164 H A 0.0000
165 R A -1.6333
166 S A -0.7685
167 V A 0.0000
168 S A 0.0000
169 W A 0.0000
170 Y A 0.0000
171 Q A -0.8851
172 Q A 0.0000
173 D A -1.2907
174 P A -1.0458
175 G A -1.5155
176 Q A -1.7853
177 G A -1.0443
178 P A 0.0000
179 Q A -1.3660
180 F A 0.0000
181 L A 0.0000
182 F A 0.0000
183 E A 0.0000
184 F A 0.0000
185 Y A -1.0219
186 H A -1.6821
187 G A -1.6512
188 S A -1.0242
189 L A -1.2012
190 R A -2.1813
191 N A -1.9129
192 K A -2.3713
193 G A -1.7121
194 N A -1.8666
195 F A -1.1584
196 P A -1.1800
197 D A -2.0797
198 R A -1.5022
199 F A 0.0000
200 S A -1.3416
201 G A -1.1731
202 R A -2.0275
203 Q A 0.0000
204 F A -0.9991
205 S A -1.1944
206 N A -1.9432
207 S A -1.8688
208 R A -1.9573
209 S A 0.0000
210 E A -1.0836
211 M A 0.0000
212 N A -0.9719
213 V A 0.0000
214 S A -1.2752
215 T A -1.4284
216 L A 0.0000
217 E A -2.1232
218 P A -1.5247
219 G A -1.1923
220 D A 0.0000
221 S A -0.8110
222 A A 0.0000
223 L A -1.1642
224 Y A 0.0000
225 L A 0.0000
226 C A 0.0000
227 A A 0.0000
228 S A 0.0000
229 S A 0.0000
230 L A 1.1550
231 A A 0.4880
232 G A -0.3273
233 D A 0.0000
234 T A 0.4603
235 Q A 0.0000
236 Y A 0.9631
237 F A 0.0477
238 G A 0.0000
239 P A -1.2787
240 G A 0.0000
241 T A 0.0000
242 R A -2.5850
243 L A 0.0000
244 T A -0.8134
245 V A -0.8580
246 T A -0.7800
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Laboratory of Theory of Biopolymers 2018