| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALTTHAGTTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAASWGTWAPLIWYWYGYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:20)
[INFO] Main: Simulation completed successfully. (00:02:22)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2577 | |
| 2 | V | A | -0.5485 | |
| 3 | Q | A | -1.0419 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.6689 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6732 | |
| 8 | G | A | -1.2142 | |
| 9 | G | A | -1.2055 | |
| 10 | G | A | -0.9485 | |
| 11 | S | A | -0.7510 | |
| 12 | V | A | -0.7920 | |
| 13 | Q | A | -1.5876 | |
| 14 | A | A | -1.6189 | |
| 15 | G | A | -1.3497 | |
| 16 | G | A | -1.0737 | |
| 17 | S | A | -1.2405 | |
| 18 | L | A | -1.1389 | |
| 19 | R | A | -2.1362 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3653 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2886 | |
| 24 | A | A | -0.4345 | |
| 25 | S | A | -0.6367 | |
| 26 | G | A | -0.7376 | |
| 27 | S | A | -0.8284 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -0.8548 | |
| 30 | S | A | -0.2367 | |
| 31 | I | A | 0.0000 | |
| 32 | T | A | 0.0000 | |
| 33 | Y | A | 0.3997 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.5357 | |
| 39 | Q | A | -2.3351 | |
| 40 | A | A | -2.1324 | |
| 41 | P | A | -1.4974 | |
| 42 | G | A | -2.0248 | |
| 43 | K | A | -3.4710 | |
| 44 | E | A | -3.8073 | |
| 45 | R | A | -3.2324 | |
| 46 | E | A | -2.0592 | |
| 47 | G | A | -0.6839 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | L | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | T | A | -0.8176 | |
| 54 | H | A | -1.1535 | |
| 55 | A | A | -0.6476 | |
| 56 | G | A | -0.6758 | |
| 57 | T | A | -0.3573 | |
| 58 | T | A | 0.0194 | |
| 59 | Y | A | 0.1263 | |
| 60 | Y | A | -0.7143 | |
| 61 | A | A | -1.3303 | |
| 62 | D | A | -2.3922 | |
| 63 | S | A | -1.7730 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5563 | |
| 66 | G | A | -1.7860 | |
| 67 | R | A | -1.5189 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8120 | |
| 70 | V | A | 0.0000 | |
| 71 | S | A | -0.2379 | |
| 72 | L | A | -0.5313 | |
| 73 | D | A | -1.5495 | |
| 74 | N | A | -2.1482 | |
| 75 | A | A | -1.6440 | |
| 76 | K | A | -2.3856 | |
| 77 | N | A | -1.8746 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.4573 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2265 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4996 | |
| 85 | S | A | -1.2662 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.3547 | |
| 88 | P | A | -1.9143 | |
| 89 | E | A | -2.3481 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.2110 | |
| 92 | A | A | 0.0000 | |
| 93 | L | A | -0.7472 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.4252 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | S | A | 0.4487 | |
| 101 | W | A | 1.0970 | |
| 102 | G | A | 0.5199 | |
| 103 | T | A | 0.0000 | |
| 104 | W | A | 1.6626 | |
| 105 | A | A | 1.3790 | |
| 106 | P | A | 1.2687 | |
| 107 | L | A | 2.4466 | |
| 108 | I | A | 2.5043 | |
| 109 | W | A | 1.8255 | |
| 110 | Y | A | 2.4633 | |
| 111 | W | A | 2.3295 | |
| 112 | Y | A | 1.2581 | |
| 113 | G | A | 0.4702 | |
| 114 | Y | A | 0.2956 | |
| 115 | W | A | 0.2570 | |
| 116 | G | A | -0.1612 | |
| 117 | Q | A | -0.9856 | |
| 118 | G | A | -0.6570 | |
| 119 | T | A | 0.0000 | |
| 120 | Q | A | -1.3731 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | -1.0094 | |
| 123 | V | A | 0.0000 | |
| 124 | S | A | -1.1248 |