Project name: query_structure

Status: done

Started: 2026-03-17 00:56:14
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALTTHAGTTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAASWGTWAPLIWYWYGYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:22)
Show buried residues

Minimal score value
-3.8073
Maximal score value
2.5043
Average score
-0.5642
Total score value
-69.9666

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2577
2 V A -0.5485
3 Q A -1.0419
4 L A 0.0000
5 V A 0.6689
6 E A 0.0000
7 S A -0.6732
8 G A -1.2142
9 G A -1.2055
10 G A -0.9485
11 S A -0.7510
12 V A -0.7920
13 Q A -1.5876
14 A A -1.6189
15 G A -1.3497
16 G A -1.0737
17 S A -1.2405
18 L A -1.1389
19 R A -2.1362
20 L A 0.0000
21 S A -0.3653
22 C A 0.0000
23 A A -0.2886
24 A A -0.4345
25 S A -0.6367
26 G A -0.7376
27 S A -0.8284
28 I A 0.0000
29 S A -0.8548
30 S A -0.2367
31 I A 0.0000
32 T A 0.0000
33 Y A 0.3997
34 L A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.5357
39 Q A -2.3351
40 A A -2.1324
41 P A -1.4974
42 G A -2.0248
43 K A -3.4710
44 E A -3.8073
45 R A -3.2324
46 E A -2.0592
47 G A -0.6839
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 L A 0.0000
52 T A 0.0000
53 T A -0.8176
54 H A -1.1535
55 A A -0.6476
56 G A -0.6758
57 T A -0.3573
58 T A 0.0194
59 Y A 0.1263
60 Y A -0.7143
61 A A -1.3303
62 D A -2.3922
63 S A -1.7730
64 V A 0.0000
65 K A -2.5563
66 G A -1.7860
67 R A -1.5189
68 F A 0.0000
69 T A -0.8120
70 V A 0.0000
71 S A -0.2379
72 L A -0.5313
73 D A -1.5495
74 N A -2.1482
75 A A -1.6440
76 K A -2.3856
77 N A -1.8746
78 T A 0.0000
79 V A 0.0000
80 Y A -0.4573
81 L A 0.0000
82 Q A -1.2265
83 M A 0.0000
84 N A -1.4996
85 S A -1.2662
86 L A 0.0000
87 K A -2.3547
88 P A -1.9143
89 E A -2.3481
90 D A 0.0000
91 T A -1.2110
92 A A 0.0000
93 L A -0.7472
94 Y A 0.0000
95 Y A -0.4252
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 A A 0.0000
100 S A 0.4487
101 W A 1.0970
102 G A 0.5199
103 T A 0.0000
104 W A 1.6626
105 A A 1.3790
106 P A 1.2687
107 L A 2.4466
108 I A 2.5043
109 W A 1.8255
110 Y A 2.4633
111 W A 2.3295
112 Y A 1.2581
113 G A 0.4702
114 Y A 0.2956
115 W A 0.2570
116 G A -0.1612
117 Q A -0.9856
118 G A -0.6570
119 T A 0.0000
120 Q A -1.3731
121 V A 0.0000
122 T A -1.0094
123 V A 0.0000
124 S A -1.1248
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Laboratory of Theory of Biopolymers 2018