| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALTTNHGGTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAASWGVAHPLYWVWYGYWGQGTQVTV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:58)
[INFO] Main: Simulation completed successfully. (00:00:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.1245 | |
| 2 | V | A | -0.3170 | |
| 3 | Q | A | -0.5900 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3948 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7633 | |
| 8 | G | A | -1.1737 | |
| 9 | G | A | -1.1715 | |
| 10 | G | A | -0.8566 | |
| 11 | S | A | -0.5681 | |
| 12 | V | A | -0.5353 | |
| 13 | Q | A | -1.3153 | |
| 14 | A | A | -1.3515 | |
| 15 | G | A | -1.2508 | |
| 16 | G | A | -1.0083 | |
| 17 | S | A | -1.2939 | |
| 18 | L | A | -1.1399 | |
| 19 | R | A | -2.1238 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4558 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3246 | |
| 24 | A | A | -0.3682 | |
| 25 | S | A | -0.5100 | |
| 26 | G | A | -0.6366 | |
| 27 | S | A | -0.8145 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -0.9036 | |
| 30 | S | A | -0.3454 | |
| 31 | I | A | 0.0000 | |
| 32 | T | A | -0.1553 | |
| 33 | Y | A | 0.2377 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.4321 | |
| 39 | Q | A | -2.1526 | |
| 40 | A | A | -2.0305 | |
| 41 | P | A | -1.4398 | |
| 42 | G | A | -1.9733 | |
| 43 | K | A | -3.3714 | |
| 44 | E | A | -3.6387 | |
| 45 | R | A | -2.9694 | |
| 46 | E | A | -1.8082 | |
| 47 | G | A | -0.6760 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | L | A | 0.0000 | |
| 52 | T | A | -0.7337 | |
| 53 | T | A | -1.1869 | |
| 54 | N | A | -1.9384 | |
| 55 | H | A | -1.8735 | |
| 56 | G | A | -1.2822 | |
| 57 | G | A | -0.7786 | |
| 58 | T | A | -0.1152 | |
| 59 | Y | A | -0.0979 | |
| 60 | Y | A | -0.7147 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3895 | |
| 63 | S | A | -1.7738 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5504 | |
| 66 | G | A | -1.8438 | |
| 67 | R | A | -1.6623 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9544 | |
| 70 | V | A | 0.0000 | |
| 71 | S | A | -0.2716 | |
| 72 | L | A | -0.5192 | |
| 73 | D | A | -1.5405 | |
| 74 | N | A | -2.1342 | |
| 75 | A | A | -1.6344 | |
| 76 | K | A | -2.3738 | |
| 77 | N | A | -1.8484 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.4847 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.4899 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9013 | |
| 85 | S | A | -1.3391 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.0213 | |
| 88 | P | A | -1.6426 | |
| 89 | E | A | -2.1965 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0041 | |
| 92 | A | A | 0.0000 | |
| 93 | L | A | -0.6789 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | S | A | 0.6208 | |
| 101 | W | A | 1.6844 | |
| 102 | G | A | 1.8618 | |
| 103 | V | A | 2.3179 | |
| 104 | A | A | 1.5792 | |
| 105 | H | A | 0.8211 | |
| 106 | P | A | 0.0000 | |
| 107 | L | A | 0.0000 | |
| 108 | Y | A | 1.9207 | |
| 109 | W | A | 2.4090 | |
| 110 | V | A | 2.1728 | |
| 111 | W | A | 2.1506 | |
| 112 | Y | A | 1.1049 | |
| 113 | G | A | 0.4640 | |
| 114 | Y | A | 0.4678 | |
| 115 | W | A | 0.4737 | |
| 116 | G | A | -0.1019 | |
| 117 | Q | A | -0.9840 | |
| 118 | G | A | -0.7206 | |
| 119 | T | A | 0.0000 | |
| 120 | Q | A | -1.3278 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | -0.7419 | |
| 123 | V | A | -0.8024 |