Project name: query_structure

Status: done

Started: 2026-03-17 00:56:32
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Chain sequence(s) A: QVQLVESGGGSVQAGGSLRLSCAASGSISSITYLGWFRQAPGKEREGVAALTTNHGGTYYADSVKGRFTVSLDNAKNTVYLQMNSLKPEDTALYYCAAASWGVAHPLYWVWYGYWGQGTQVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-3.6387
Maximal score value
2.409
Average score
-0.5656
Total score value
-69.5627

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.1245
2 V A -0.3170
3 Q A -0.5900
4 L A 0.0000
5 V A 0.3948
6 E A 0.0000
7 S A -0.7633
8 G A -1.1737
9 G A -1.1715
10 G A -0.8566
11 S A -0.5681
12 V A -0.5353
13 Q A -1.3153
14 A A -1.3515
15 G A -1.2508
16 G A -1.0083
17 S A -1.2939
18 L A -1.1399
19 R A -2.1238
20 L A 0.0000
21 S A -0.4558
22 C A 0.0000
23 A A -0.3246
24 A A -0.3682
25 S A -0.5100
26 G A -0.6366
27 S A -0.8145
28 I A 0.0000
29 S A -0.9036
30 S A -0.3454
31 I A 0.0000
32 T A -0.1553
33 Y A 0.2377
34 L A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A -1.4321
39 Q A -2.1526
40 A A -2.0305
41 P A -1.4398
42 G A -1.9733
43 K A -3.3714
44 E A -3.6387
45 R A -2.9694
46 E A -1.8082
47 G A -0.6760
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 L A 0.0000
52 T A -0.7337
53 T A -1.1869
54 N A -1.9384
55 H A -1.8735
56 G A -1.2822
57 G A -0.7786
58 T A -0.1152
59 Y A -0.0979
60 Y A -0.7147
61 A A 0.0000
62 D A -2.3895
63 S A -1.7738
64 V A 0.0000
65 K A -2.5504
66 G A -1.8438
67 R A -1.6623
68 F A 0.0000
69 T A -0.9544
70 V A 0.0000
71 S A -0.2716
72 L A -0.5192
73 D A -1.5405
74 N A -2.1342
75 A A -1.6344
76 K A -2.3738
77 N A -1.8484
78 T A 0.0000
79 V A 0.0000
80 Y A -0.4847
81 L A 0.0000
82 Q A -1.4899
83 M A 0.0000
84 N A -1.9013
85 S A -1.3391
86 L A 0.0000
87 K A -2.0213
88 P A -1.6426
89 E A -2.1965
90 D A 0.0000
91 T A -1.0041
92 A A 0.0000
93 L A -0.6789
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 A A 0.0000
100 S A 0.6208
101 W A 1.6844
102 G A 1.8618
103 V A 2.3179
104 A A 1.5792
105 H A 0.8211
106 P A 0.0000
107 L A 0.0000
108 Y A 1.9207
109 W A 2.4090
110 V A 2.1728
111 W A 2.1506
112 Y A 1.1049
113 G A 0.4640
114 Y A 0.4678
115 W A 0.4737
116 G A -0.1019
117 Q A -0.9840
118 G A -0.7206
119 T A 0.0000
120 Q A -1.3278
121 V A 0.0000
122 T A -0.7419
123 V A -0.8024
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Laboratory of Theory of Biopolymers 2018