| Chain sequence(s) |
A: GGWAKRQKLWLLKVTRHGRV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:57)
[INFO] Main: Simulation completed successfully. (00:00:58)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.7621 | |
| 2 | G | A | -1.0483 | |
| 3 | W | A | -0.5838 | |
| 4 | A | A | -1.1725 | |
| 5 | K | A | -2.3225 | |
| 6 | R | A | -2.0810 | |
| 7 | Q | A | -1.1278 | |
| 8 | K | A | -1.0488 | |
| 9 | L | A | 0.3758 | |
| 10 | W | A | 0.6481 | |
| 11 | L | A | 1.1575 | |
| 12 | L | A | 0.7607 | |
| 13 | K | A | -0.5515 | |
| 14 | V | A | 0.2727 | |
| 15 | T | A | -0.6625 | |
| 16 | R | A | -2.3122 | |
| 17 | H | A | -1.8277 | |
| 18 | G | A | -1.7916 | |
| 19 | R | A | -2.0233 | |
| 20 | V | A | -0.0545 |