| Chain sequence(s) |
A: QVQLQESGGGLVQPGGSLRLSCTVSGINFDTTYMYWVRQAPGKGLEWVSGIAPSGYTQKYADFVKGRFTISRDSAKNTLYLQMNSLQPEDTAVYYCAKDRAGDSRGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:36)
[INFO] Main: Simulation completed successfully. (00:01:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2800 | |
| 2 | V | A | -0.9108 | |
| 3 | Q | A | -1.8157 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7386 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.1660 | |
| 8 | G | A | -1.1585 | |
| 9 | G | A | -0.7971 | |
| 10 | G | A | -0.0358 | |
| 11 | L | A | 1.0426 | |
| 12 | V | A | 0.0414 | |
| 13 | Q | A | -1.2567 | |
| 14 | P | A | -1.4376 | |
| 15 | G | A | -1.2970 | |
| 16 | G | A | -0.8916 | |
| 17 | S | A | -1.0727 | |
| 18 | L | A | -0.9483 | |
| 19 | R | A | -2.1335 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8143 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.1157 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.0957 | |
| 26 | G | A | -1.0198 | |
| 27 | I | A | -1.0639 | |
| 28 | N | A | -1.6910 | |
| 29 | F | A | 0.0000 | |
| 30 | D | A | -2.2557 | |
| 31 | T | A | -1.0961 | |
| 32 | T | A | -0.4469 | |
| 33 | Y | A | 0.3517 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | -0.5551 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | -0.8781 | |
| 39 | Q | A | -1.3149 | |
| 40 | A | A | -1.5647 | |
| 41 | P | A | -1.3494 | |
| 42 | G | A | -1.5215 | |
| 43 | K | A | -2.4000 | |
| 44 | G | A | -1.5261 | |
| 45 | L | A | -1.0377 | |
| 46 | E | A | -1.4646 | |
| 47 | W | A | -0.9701 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | A | A | 0.0000 | |
| 53 | P | A | -0.4268 | |
| 54 | S | A | -0.1696 | |
| 55 | G | A | 0.0334 | |
| 56 | Y | A | 0.7760 | |
| 57 | T | A | -0.2139 | |
| 58 | Q | A | -1.2236 | |
| 59 | K | A | -2.2466 | |
| 60 | Y | A | -1.7475 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.2784 | |
| 63 | F | A | -1.0690 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.6547 | |
| 66 | G | A | -1.7019 | |
| 67 | R | A | -1.3928 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.1658 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.2865 | |
| 72 | R | A | -0.8998 | |
| 73 | D | A | -1.4495 | |
| 74 | S | A | -1.7805 | |
| 75 | A | A | -1.3727 | |
| 76 | K | A | -2.1326 | |
| 77 | N | A | -2.0171 | |
| 78 | T | A | -1.1816 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.5575 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2447 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4797 | |
| 85 | S | A | -1.1990 | |
| 86 | L | A | 0.0000 | |
| 87 | Q | A | -1.9114 | |
| 88 | P | A | -1.7171 | |
| 89 | E | A | -2.1370 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.8608 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4480 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | K | A | -1.1886 | |
| 99 | D | A | -1.7312 | |
| 100 | R | A | -1.9863 | |
| 101 | A | A | -1.5601 | |
| 102 | G | A | 0.0000 | |
| 103 | D | A | -2.4576 | |
| 104 | S | A | -1.9317 | |
| 105 | R | A | -2.3415 | |
| 106 | G | A | -1.8976 | |
| 107 | Q | A | -1.9150 | |
| 108 | G | A | -1.3353 | |
| 109 | T | A | -1.1141 | |
| 110 | Q | A | -1.1837 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.2371 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.5933 | |
| 115 | S | A | -0.4939 |