Project name: query_structure

Status: done

Started: 2026-03-17 00:30:27
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Chain sequence(s) A: QVQLQESGGGLVQPGGSLRLSCTVSGINFDTTYMYWVRQAPGKGLEWVSGIAPSGYTQKYADFVKGRFTISRDSAKNTLYLQMNSLQPEDTAVYYCAKDRAGDSRGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-2.6547
Maximal score value
1.0426
Average score
-0.8853
Total score value
-101.8092

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2800
2 V A -0.9108
3 Q A -1.8157
4 L A 0.0000
5 Q A -1.7386
6 E A 0.0000
7 S A -1.1660
8 G A -1.1585
9 G A -0.7971
10 G A -0.0358
11 L A 1.0426
12 V A 0.0414
13 Q A -1.2567
14 P A -1.4376
15 G A -1.2970
16 G A -0.8916
17 S A -1.0727
18 L A -0.9483
19 R A -2.1335
20 L A 0.0000
21 S A -0.8143
22 C A 0.0000
23 T A -1.1157
24 V A 0.0000
25 S A -1.0957
26 G A -1.0198
27 I A -1.0639
28 N A -1.6910
29 F A 0.0000
30 D A -2.2557
31 T A -1.0961
32 T A -0.4469
33 Y A 0.3517
34 M A 0.0000
35 Y A -0.5551
36 W A 0.0000
37 V A 0.0000
38 R A -0.8781
39 Q A -1.3149
40 A A -1.5647
41 P A -1.3494
42 G A -1.5215
43 K A -2.4000
44 G A -1.5261
45 L A -1.0377
46 E A -1.4646
47 W A -0.9701
48 V A 0.0000
49 S A 0.0000
50 G A 0.0000
51 I A 0.0000
52 A A 0.0000
53 P A -0.4268
54 S A -0.1696
55 G A 0.0334
56 Y A 0.7760
57 T A -0.2139
58 Q A -1.2236
59 K A -2.2466
60 Y A -1.7475
61 A A 0.0000
62 D A -2.2784
63 F A -1.0690
64 V A 0.0000
65 K A -2.6547
66 G A -1.7019
67 R A -1.3928
68 F A 0.0000
69 T A -1.1658
70 I A 0.0000
71 S A -0.2865
72 R A -0.8998
73 D A -1.4495
74 S A -1.7805
75 A A -1.3727
76 K A -2.1326
77 N A -2.0171
78 T A -1.1816
79 L A 0.0000
80 Y A -0.5575
81 L A 0.0000
82 Q A -1.2447
83 M A 0.0000
84 N A -1.4797
85 S A -1.1990
86 L A 0.0000
87 Q A -1.9114
88 P A -1.7171
89 E A -2.1370
90 D A 0.0000
91 T A -0.8608
92 A A 0.0000
93 V A -0.4480
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 K A -1.1886
99 D A -1.7312
100 R A -1.9863
101 A A -1.5601
102 G A 0.0000
103 D A -2.4576
104 S A -1.9317
105 R A -2.3415
106 G A -1.8976
107 Q A -1.9150
108 G A -1.3353
109 T A -1.1141
110 Q A -1.1837
111 V A 0.0000
112 T A -0.2371
113 V A 0.0000
114 S A -0.5933
115 S A -0.4939
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Laboratory of Theory of Biopolymers 2018